Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g00021 ATGCAGCATCGCCGGAGAAGGTGTGTCCAAGTCCAACCATCGGAGAAGGAATCCAAACATTTTATGAAAGCCATACTTCCCTCACCCATTCATGCCAAACAAATTAGAATTCCAGATGAGTTTATAACAAGATTTGGAAATGAACTCGGCAATGTGGCTAAGATTACTGTTCCCAATGGTCGTGAATGGGACATGGAACTGAAGAAATGTGGCAACGGCGTTTTCCTTTCCAACAAATGGGAAGAGTTTGCAGAATACTATTCTATCAGTTATGGTTGTTATTTAGATTTCAAGTATGAAGGGAACTCGGAGTTTAATGTTGTTATATATGATACAACTTCTGTTGAAATTTGCTATCCATTCAAAACTCCAAGTACTAATGGAAAACCAAACATAGAGTGTCCTAAAAGAGCAAAGGATTCTGTCAATGGAATCAATCCAGAAAACCCTTCTTTTTGTTCCAAATCCTTTAGAGACAACTTTGCGTATGTTCCTGCTGAATTTGCTCCAAAGTATCTGAAGCCATATGTTCCATTCAAGCTCCAAAATTCTCAAGGAAAGCAATGGGAAGTTTCTTGCGTGTTGCATAAAAAAGGAAAATCAATGCGAATAACAATTGGATTCCGTAAATTTGCAAGGGATAACAATCTATTAAAGGGTGTTATTTATAATTTTGAGCTGATCAAGAGTGAGCCGGTTATTGTGCTCGAAGTTACAGCGGCCCACATGCCTTGGCAGCAAAAGTGTGTCCGGTCATCAGAGGAGAAGGGACTTGGGGATTCTGAACATTTTAAGAAGGCCATACTTCCCTCGCCCATTCATGCCAAACAAATTAAAATTCCAGATAACTTCATAACACTTTTTGGGAAATCAATGTTTAGTGTTATTATATTTGATGCAACTTCTGTTGAGATTGTCTATCCATTCAAAACTCCAAGTAATGATGGAGAATTATACACCAAGTGTCCTAGTCCTAGGAAGAGGTCCAAGGTTGAAACAAGTAAGAGTCGAGGGAAAAAGCTCAAAAGCATGTCTATACATGCATCTAAAAGAGCAGAGGTTGCTGCCATTGAATTCAAACCAAGCTACCCCTATTTTCGTTCAAAAATTGCTAAGCAAAGATATGTGTATGTTCGTTGTGATTTTGCTGCAAAGTATCTGAAGCAAAATGTTCCTATAAAGGTCCAAAATGCTCATGGAGAAGAGTGGGAAGTTTTTTGCATACCAAATACTTTTGGATCGTCGGAGATGCGAATAGTGAGGGGATTTCCAAATTTCCAAAGGGCCAACAATCTATCACATGGAGATTATTGTGTGTTTGAGCTAGTCAAGAAGAAGCCGGTTGTGCTAAAAGTAACAATGTTTCGCACAGTTGACTACTGTGATTAA 1389 0.3873 MQHRRRRCVQVQPSEKESKHFMKAILPSPIHAKQIRIPDEFITRFGNELGNVAKITVPNGREWDMELKKCGNGVFLSNKWEEFAEYYSISYGCYLDFKYEGNSEFNVVIYDTTSVEICYPFKTPSTNGKPNIECPKRAKDSVNGINPENPSFCSKSFRDNFAYVPAEFAPKYLKPYVPFKLQNSQGKQWEVSCVLHKKGKSMRITIGFRKFARDNNLLKGVIYNFELIKSEPVIVLEVTAAHMPWQQKCVRSSEEKGLGDSEHFKKAILPSPIHAKQIKIPDNFITLFGKSMFSVIIFDATSVEIVYPFKTPSNDGELYTKCPSPRKRSKVETSKSRGKKLKSMSIHASKRAEVAAIEFKPSYPYFRSKIAKQRYVYVRCDFAAKYLKQNVPIKVQNAHGEEWEVFCIPNTFGSSEMRIVRGFPNFQRANNLSHGDYCVFELVKKKPVVLKVTMFRTVDYCD 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g00021 462 Gene3D - 345 461 IPR015300 -
Trre6g00021 462 Gene3D - 133 243 IPR015300 -
Trre6g00021 462 SUPERFAMILY DNA-binding pseudobarrel domain 360 456 IPR015300 -
Trre6g00021 462 ProSiteProfiles B3 DNA-binding domain profile. 20 113 IPR003340 GO:0003677
Trre6g00021 462 SMART B3_2 365 458 IPR003340 GO:0003677
Trre6g00021 462 SMART B3_2 153 239 IPR003340 GO:0003677
Trre6g00021 462 SMART B3_2 21 113 IPR003340 GO:0003677
Trre6g00021 462 CDD B3_DNA 382 441 IPR003340 GO:0003677
Trre6g00021 462 CDD B3_DNA 163 238 IPR003340 GO:0003677
Trre6g00021 462 ProSiteProfiles B3 DNA-binding domain profile. 393 458 IPR003340 GO:0003677
Trre6g00021 462 CDD B3_DNA 19 111 IPR003340 GO:0003677
Trre6g00021 462 PANTHER B3 DOMAIN-CONTAINING 289 449 - -
Trre6g00021 462 SUPERFAMILY DNA-binding pseudobarrel domain 159 233 IPR015300 -
Trre6g00021 462 Pfam B3 DNA binding domain 21 110 IPR003340 GO:0003677
Trre6g00021 462 Pfam B3 DNA binding domain 374 457 IPR003340 GO:0003677
Trre6g00021 462 Pfam B3 DNA binding domain 155 230 IPR003340 GO:0003677
Trre6g00021 462 Gene3D - 12 114 IPR015300 -
Trre6g00021 462 SUPERFAMILY DNA-binding pseudobarrel domain 16 112 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g00021 Trre-Chr6 151669 154883 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g00021 164 462 B3 DNA Binding Superfamily AT3G18990 26.471 1.05e-13 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre6g00021 B3 7.9e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g00021 - - mtr:11408476 512.301