Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05978 ATGATCTCTCCCACTCGCCACAATATGTCTAGATCAGCTAGGAGGAGGAAAAACAGTGGTCATTGGTGGTTGTCATCAATATCATGGATGAAGAAGGAGGTTGACTCATATGCCACGACTCATCAGACTCAGCTCTCTTCTGATAGTCCTTATTACAAGGGTCTCACCGATCAATCTCTTGCTATTACTCATGAAGACTATGAAGACGTCGACAACAACACCGATATCTCTTCACCACTACGACCTCTCCTCCTTTCATCATCCCCCCACAGTAGTCCTTACTACAAAGGTCTTACCGATTATTCTCTTGTAGTCGATGCCTCTTGGGCCAGTCATCATTCGCATCCTCACCTCCATCCCCAGCACAACTCTCCCCTTTCTTGTTACCATGACTCAAGTCCATACTATAGAGGTCTTATTGCTCTTCCTGTTCCTACCTCCCCCTCCTCTCTCTTCTCTCTCAACATCAATTTCAAAACCACCACTGACGCCGCCCAACCATCAACTCATGATTTTGTTGTCTTTTTAAGTCCAGAAGATCAGTCACTGATGGTAACAGAGCCAGGAGCAACTTTAGATGATGAGATGGAGTTGATCCATCCTGATATCCAAGGGAAGCCTTTGAGGGTTAAAGATAAGTTGTCATCACAAGCAACTTTGGAAGAGATAGATGATGATATTGAAGGGGGGAAGCCTTCGAGGGTTAATTATGAATCAGAATCAGTTCCAGAGAAAACTATTTTGGAAGATGTTGTGTTGTTGGTTGAAGAGCATAAGAGGAAGTCTTTGAGTGAGAGAGTAGCGTCAGATTCTGAGACAATATTGTTACAACAAATAAATGCTGACAAAACAGATTTGGTTTTGGAGGAGGAGATGGAATTAGTCACTGAACAAGAGAAGCCATTGAGAGAGAGTCGTGCATCAGAAGTTGAAAATGAGAACGTCCTAATAAATATAGATTTGAAAGCAGAACTCAAAGACTTTTGGTTGGGTGGTCAAAAGACTGTTTATGAACAAACAGTGTCACTGGAATTACCTTGTGAGCACAAGTTGAAGGACACAACTGTGGAAGGAAATCTGTATGAGTATCTGTGGGCAACCAAATACCAGCCCAAGAACTTGGCTGACTTCATCTGTAACAGAGATAAAGCACTTCAGCTGAAAGAATTGGTACAGGGTGGGTGCGGCTGTAATCATTTTATATTCGAAGGACCCCCAAATGTTGGAAAAAGATCCATGATACGGGCTATGCTTCGAGAGGTATTCGGCGCTGACGGAGTGCAGGTCACAGAAGAATATAAAGACTTCAGCTTGAAGGGAGAAATGGTTGAAAATCTGCAACTGCGCCTAAAGAAATCACTCCATCATGTTGAGGTGAATCTGTCAGAAGCAAAGGGATATGAAAAACATGTGATTTCTGAGTTATTCAAGGAAACTTATGGTAAAGTGATAAATAGCTCATTGCCTTGTAGCCCAGAAAACTGTCAAGCAATCATTTTGTATGATGCGGAGAAGCTATCATTAGAATCGGTGTTGTATATCAAGTGGATGGTAGAAAAGTATAAAGGGTGTAATAAACTGTTCTTTTGCTGCTCTGATGAATCAAGGCTACAACCTATCCAATCACATTGCACCACTGTCCGCCTTTCATCACCATCAACACAACAGATTGTGAAGATTTTGGAATGGATTGTAGAAGAAGAAGGAATCAAATTATCACGCGAGTCAATCAAGAAGATAATTTTGAGGTCCAAAAACAATCTCCGTCAAGCCATTCGTTCATTGGAGGCCACTTACCGGCACAAGAATGCTCTCAACGAGGATGAGTTCATTTTAACTGGATGGGAGGATGATATTTTGAATATTGCTAAAAATATAATCAGAGAACAGAGTCCAAGACAGTTGTATGCCATTCGTAGAAAGCTTCAAAGTCTTATGATTCATGATGTTCCTCCTGAGTTTATCTACAAGTCTTTGGTAGACAACTTAACGAGTCTAGTTGACGACTCACTATGTTCAGGGGTTTCCAATCTTCACAAGGAGTACACCAAAGGTAGTGAAATCAAATTTGAAAGTGTGAAACATCATGCTCAAAACAAACAAGGAGGATCAAATGAAAGGAGCACTGAACTAACAAAAAAGAATGCAATGAACTACTTAAAAGTTGAAGAATTCATAGCAAAATTCATGAGCTGGTACAAGAATTCGTGTAAAAGTGATGATCATGTGCAACTTATTGCTGGGCCAGGAACATAG 2256 0.41 MISPTRHNMSRSARRRKNSGHWWLSSISWMKKEVDSYATTHQTQLSSDSPYYKGLTDQSLAITHEDYEDVDNNTDISSPLRPLLLSSSPHSSPYYKGLTDYSLVVDASWASHHSHPHLHPQHNSPLSCYHDSSPYYRGLIALPVPTSPSSLFSLNINFKTTTDAAQPSTHDFVVFLSPEDQSLMVTEPGATLDDEMELIHPDIQGKPLRVKDKLSSQATLEEIDDDIEGGKPSRVNYESESVPEKTILEDVVLLVEEHKRKSLSERVASDSETILLQQINADKTDLVLEEEMELVTEQEKPLRESRASEVENENVLINIDLKAELKDFWLGGQKTVYEQTVSLELPCEHKLKDTTVEGNLYEYLWATKYQPKNLADFICNRDKALQLKELVQGGCGCNHFIFEGPPNVGKRSMIRAMLREVFGADGVQVTEEYKDFSLKGEMVENLQLRLKKSLHHVEVNLSEAKGYEKHVISELFKETYGKVINSSLPCSPENCQAIILYDAEKLSLESVLYIKWMVEKYKGCNKLFFCCSDESRLQPIQSHCTTVRLSSPSTQQIVKILEWIVEEEGIKLSRESIKKIILRSKNNLRQAIRSLEATYRHKNALNEDEFILTGWEDDILNIAKNIIREQSPRQLYAIRRKLQSLMIHDVPPEFIYKSLVDNLTSLVDDSLCSGVSNLHKEYTKGSEIKFESVKHHAQNKQGGSNERSTELTKKNAMNYLKVEEFIAKFMSWYKNSCKSDDHVQLIAGPGT 751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05978 751 SUPERFAMILY post-AAA+ oligomerization domain-like 614 679 IPR008921 GO:0003677|GO:0006260
Trre5g05978 751 Gene3D - 363 552 IPR027417 -
Trre5g05978 751 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 365 694 - -
Trre5g05978 751 CDD HLD_clamp_RFC 552 608 - -
Trre5g05978 751 Gene3D - 614 733 - -
Trre5g05978 751 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 361 606 IPR027417 -
Trre5g05978 751 Gene3D - 553 613 - -
Trre5g05978 751 Coils Coil 585 605 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05978 Trre-Chr5 59068554 59073150 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05978 364 735 Core DNA Replication Machinery Family AT5G27740 31.117 2.71e-49 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05978 K10756 - gmx:102664389 637.106