Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05977 ATGAAGGTACCTAGCCCGACACAGAAGCAATCTGTTGGGGATCGTCTCATGATCTCTCCCACTCGCCACAATATGTCTAGATCAGCTAGGAGGAGGAAAAACAGTGGTCATTGGTGGTTGTCATCAATATCATGGATGAAGAAGGAGGTTGACTCATATGCCACGACTCATCAGACTCAGCTCTCTTCTGATAGTCCTTATTACAAGGGTCTCACCGATCAATCTCTTGCTATTACTCATGAAGACTATGAAGACGTCGACAACAACACCGATATCTCTTCACCACTACGACCTCTCCTCCTTTCATCATCCCCCCACAGTAGTCCTTACTACAAAGGTCTTACCGATTATTCTCTTGTAGTCGATGCCTCTTGGGCCAGTCATCATTCGCATCCTCACCTCCATCCCCAGCACAACTCTCCCCTTTCTTGTTACCATGACTCAAGTCCATACTATAGAGGTCTTATTGCTCTTCCTGTTCCTACCTCCCCCTCCTCTCTCTTCTCTCTCAACATCAATTTCAAAACCACCACTGACGCCGCCCAACCATCAACTCATGATTTTGTTGTCTTTTTAAGTCCAGAAGATCAGTCACTGATGGTAACAGAGCCAGGAGCAACTTTAGATGATGAGATGGAGTTGATCCATCCTGATATCCAAGGGAAGCCTTTGAGGGTTAAAGATAAGTTGTCATCACAAGCAACTTTGGAAGAGATAGATGATGATATTGAAGGGGGGAAGCCTTCGAGGGTTAATTATGAATCAGAATCAGTTCCAGAGAAAACTATTTTGGAAGATGTTGTGTTGTTGGTTGAAGAGCATAAGAGGAAGTCTTTGAGTGAGAGAGTAGCGTCAGATTCTGAGACAATATTGTTACAACAAATAAATGCTGACAAAACAGATTTGGTTTTGGAGGAGGAGATGGAATTAGTCACTGAACAAGAGAAGCCATTGAGAGAGAGTCGTGCATCAGAAGTTGAAAATGAGAACGTCCTAATAAATATAGATTTGAAAGCAGAACTCAAAGACTTTTGGTTGGGTGGTCAAAAGACTGTTTATGAACAAACAGTGTCACTGGAATTACCTTGTGAGCACAAGTTGAAGGACACAACTGTGGAAGGAAATCTGTATGAGTATCTGTGGGCAACCAAATACCAGCCCAAGAACTTGGCTGACTTCATCTGTAACAGAGATAAAGCACTTCAGCTGAAAGAATTGGTACAGGGTGGGTGCGGCTGTAATCATTTTATATTCGAAGGACCCCCAAATGTTGGAAAAAGATCCATGATACGGGCTATGCTTCGAGAGGTATTCGGCGCTGACGGAGTGCAGGTCACAGAAGAATATAAAGACTTCAGCTTGAAGGGAGAAATGGTTGAAAATCTGCAACTGCGCCTAAAGAAATCACTCCATCATGTTGAGGTGAATCTGTCAGAAGCAAAGGGATATGAAAAACATGTGATTTCTGAGTTATTCAAGGAAACTTATGGTAAAGTGATAAATAGCTCATTGCCTTGTAGCCCAGAAAACTGTCAAGCAATCATTTTGTATGATGCGGAGAAGCTATCATTAGAATCGGTGTTGTATATCAAGTGGATGGTAGAAAAGTATAAAGGGTGTAATAAACTGTTCTTTTGCTGCTCTGATGAATCAAGGCTACAACCTATCCAATCACATTGCACCACTGTCCGCCTTTCATCACCATCAACACAACAGATTGTGAAGATTTTGGAATGGATTGTAGAAGAAGAAGGAATCAAATTATCACGCGAGTCAATCAAGAAGATAATTTTGAGGTCCAAAAACAATCTCCGTCAAGCCATTCGTTCATTGGAGGCCACTTACCGGCACAAGAATGCTCTCAACGAGGATGAGTTCATTTTAACTGGATGGGAGGATGATATTTTGAATATTGCTAAAAATATAATCAGAGAACAGAGTCCAAGACAGTTGTATGCCATTCGTAGAAAGCTTCAAAGTCTTATGATTCATGATGTTCCTCCTGAGTTTATCTACAAGTCTTTGGTAGACAACTTAACGAGTCTAGTTGACGACTCACTATGTTCAGGGGTTTCCAATCTTCACAAGGAGTACACCAAAGGTAGTGAAATCAAATTTGAAAGTGTGAAACATCATGCTCAAAACAAACAAGGAGGATCAAATGAAAGGAGCACTGAACTAACAAAAAAGAATGCAATGAACTACTTAAAAGTTGAAGAATTCATAGCAAAATTCATGAGCTGGTACAAGAATTCGTGTAAAAGTGATGATCATGTGCAACTTATTGCTGGGCCAGGAACATAG 2304 0.4123 MKVPSPTQKQSVGDRLMISPTRHNMSRSARRRKNSGHWWLSSISWMKKEVDSYATTHQTQLSSDSPYYKGLTDQSLAITHEDYEDVDNNTDISSPLRPLLLSSSPHSSPYYKGLTDYSLVVDASWASHHSHPHLHPQHNSPLSCYHDSSPYYRGLIALPVPTSPSSLFSLNINFKTTTDAAQPSTHDFVVFLSPEDQSLMVTEPGATLDDEMELIHPDIQGKPLRVKDKLSSQATLEEIDDDIEGGKPSRVNYESESVPEKTILEDVVLLVEEHKRKSLSERVASDSETILLQQINADKTDLVLEEEMELVTEQEKPLRESRASEVENENVLINIDLKAELKDFWLGGQKTVYEQTVSLELPCEHKLKDTTVEGNLYEYLWATKYQPKNLADFICNRDKALQLKELVQGGCGCNHFIFEGPPNVGKRSMIRAMLREVFGADGVQVTEEYKDFSLKGEMVENLQLRLKKSLHHVEVNLSEAKGYEKHVISELFKETYGKVINSSLPCSPENCQAIILYDAEKLSLESVLYIKWMVEKYKGCNKLFFCCSDESRLQPIQSHCTTVRLSSPSTQQIVKILEWIVEEEGIKLSRESIKKIILRSKNNLRQAIRSLEATYRHKNALNEDEFILTGWEDDILNIAKNIIREQSPRQLYAIRRKLQSLMIHDVPPEFIYKSLVDNLTSLVDDSLCSGVSNLHKEYTKGSEIKFESVKHHAQNKQGGSNERSTELTKKNAMNYLKVEEFIAKFMSWYKNSCKSDDHVQLIAGPGT 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05977 767 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 377 622 IPR027417 -
Trre5g05977 767 CDD HLD_clamp_RFC 568 624 - -
Trre5g05977 767 Gene3D - 630 749 - -
Trre5g05977 767 Gene3D - 569 629 - -
Trre5g05977 767 SUPERFAMILY post-AAA+ oligomerization domain-like 630 695 IPR008921 GO:0003677|GO:0006260
Trre5g05977 767 Gene3D - 379 568 IPR027417 -
Trre5g05977 767 MobiDBLite consensus disorder prediction 1 30 - -
Trre5g05977 767 Coils Coil 601 621 - -
Trre5g05977 767 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 381 710 - -
Trre5g05977 767 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05977 Trre-Chr5 59068506 59073150 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05977 380 751 Core DNA Replication Machinery Family AT5G27740 31.117 3.47e-49 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05977 K10756 - gmx:102664389 641.343