Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05974 ATGGTTTTGGTGGGTGTTTGTGGAAAAGCGGTGCTGTTTAGTATCGGAGTCAGAGTCAGACCCACCACACACTCTGTCTTTATTGTTTCCAATTCCACCGCCGATAGCCAAGACACAACAGCAGTAGCAGCAACAACGAGTTTCGGTAGACTAAAAGTCCAGAAAGTGAAGGCTCTCATCCACAGAACGAAGCAAAACACAAGACGCGAACAAGTAATAGTAGAAGAAGAAGATGACCGCTGTACTTCTCAAAGACAACAACGACGACGCTCTGATTCAAGAGGAGGATGGGGAGATAATAAGGTTACTCAGACTCAACCATTGCCAGAGGCTGATACCAACTTTTTCAGTCTCAAATCATTTAAAGACATTGGATGCGCTGATTTTATGATTCAATCACTTCATAACCTCTCTTTAACACGCCCTTCCAATATACAAGCCATGTCTTTTCCTCCAATTATTGCTCGAAAGTCTTGTATCATAGCTGACCAGAGTGGTTCTGGAAAGACATTAGCTTATCTTCTACCAATCATTCAACGTCTCAAACAACAAGAACTACAACAGCAACAACAACCACCTCTTCATAATTCACAATCTCCTACTGTTCTTATACTCGCTCCCACATCAGAGTTAGCTTCTCAGGTCTTAGATAATTGTCGATCATTGTCAAAATCTGGGGTTCCATTCAAATCTATGGTTGTCACAGGAGGCTTTCGACAAAAAACTCAACTCGATAGTTTAAAGCAGGGTGTTGATGTCTTAATAGCTACACCTGGCCGTTTTCTTTTCCTCATAAAGGAAGGTTTCTTGCACTTAACAAATCTAACATGTGCTGTGTTGGATGAGGTAGACATACTCTTTGGGGACGAGGACTTCGAAAAGGCTCTGCAATGCTTGATTAGTTCTTCGCCAGTGGACACACAATATCTATTTGTGACTGCAACTTTACCAAAAAATGTTTACAGCAAACTGGTTGAAGTTTTTCCTGATTGTGAAATGGTCATGGGACCTAGTATGCATCGAATAAGCTCTCGCCTTGAAGAGATAATAATAGATTGCAGTGGGGAAGATGGACAAGAAAAAACTCTCGACACAGCATTTTTGAACAAGAAAGCTGCTCTTCTGAAGCTTGCAGAGAAGAATCGTGTCCCAAGAACTATTGTGTTCTGTAACAAAATTGAAACATGCAGAAAAGTTGAAAATGCATTAAAGCGTTTTGATAGAAAGGGAAGTCGCATGCAAGTTCTACCTTTCCATGCTGCCATGACACAAGAATCACGGCTTGCTAGTATGAAAGAGTTTACACGTTCTCCATCAAAAGAAGTGTCCCAATTTATGATATGCACTGATAGAGCATCGCGGGGAATTGACTTCACTAGAGTGGATCATGTAATACTTTTTGACTACCCACGTGATCCAAGCGAATATGTACGGCGTGTAGGAAGAACTGCAAGAGGTGCCAGGGGACAGGGCAAGGCATTTATCTTTGTAGTTGGCAAGCAAGTATCCCTTGCAAACAAAATAATGGAAAGGAATCGGAAGGGTCATCCACTGCACGATGTACCTTCGGCTTATGAGTATTGA 1584 0.4179 MVLVGVCGKAVLFSIGVRVRPTTHSVFIVSNSTADSQDTTAVAATTSFGRLKVQKVKALIHRTKQNTRREQVIVEEEDDRCTSQRQQRRRSDSRGGWGDNKVTQTQPLPEADTNFFSLKSFKDIGCADFMIQSLHNLSLTRPSNIQAMSFPPIIARKSCIIADQSGSGKTLAYLLPIIQRLKQQELQQQQQPPLHNSQSPTVLILAPTSELASQVLDNCRSLSKSGVPFKSMVVTGGFRQKTQLDSLKQGVDVLIATPGRFLFLIKEGFLHLTNLTCAVLDEVDILFGDEDFEKALQCLISSSPVDTQYLFVTATLPKNVYSKLVEVFPDCEMVMGPSMHRISSRLEEIIIDCSGEDGQEKTLDTAFLNKKAALLKLAEKNRVPRTIVFCNKIETCRKVENALKRFDRKGSRMQVLPFHAAMTQESRLASMKEFTRSPSKEVSQFMICTDRASRGIDFTRVDHVILFDYPRDPSEYVRRVGRTARGARGQGKAFIFVVGKQVSLANKIMERNRKGHPLHDVPSAYEY 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05974 527 Gene3D - 340 520 IPR027417 -
Trre5g05974 527 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 369 527 IPR001650 -
Trre5g05974 527 Pfam Helicase conserved C-terminal domain 370 486 IPR001650 -
Trre5g05974 527 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 150 334 IPR014001 -
Trre5g05974 527 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 153 498 IPR027417 -
Trre5g05974 527 Pfam DEAD/DEAH box helicase 144 320 IPR011545 GO:0003676|GO:0005524
Trre5g05974 527 SMART ultradead3 138 349 IPR014001 -
Trre5g05974 527 MobiDBLite consensus disorder prediction 75 96 - -
Trre5g05974 527 Gene3D - 65 334 IPR027417 -
Trre5g05974 527 MobiDBLite consensus disorder prediction 75 108 - -
Trre5g05974 527 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 62 525 - -
Trre5g05974 527 SMART helicmild6 397 487 IPR001650 -
Trre5g05974 527 CDD DEADc 130 320 - -
Trre5g05974 527 CDD SF2_C_DEAD 346 497 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05974 Trre-Chr5 59061683 59064481 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05974 118 508 Eukaryotic Initiation Factors Gene Family AT3G19760 26.598 1.61e-28 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05974 K13179 - gmx:100780849 690.649