Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05966 ATGAAGGCATTCATGAAGGCTCAGAAGCCTAGGGCTTACTTCAAGAGGTATCAAGTCAAGTTTAAGAGAAGAAGAGAGGGAAAGACTGATTACAGAGCCAGGATTCGTTTGATTAATCAGGACAAAAACAAGTACAACACTCCAAAATTTCGTTTCGTCGTCAGATTCACAAACAAGGATATTGTTGCTCAAATCGTCTCTGCTAGCATTGCCGGTGACATTGTTCTCGCCGCAGCTTATGCACACGAGCTTCCTCAATTTGGTCTTGAAGTAGGCCTTACAAACTATGCTGCAGCCTATTGCACCGGTCTCCTTTTGGCTCGTAGAGTTCTTAAAACTCTTGAAATGGATGAAGAGTATGAGGGCAATGTAGAGGCTACCGGAGAGGATTATTCAGTTGAACCAGCTGAGTCCAGGAGGCCATTCCGTGCTCTCCTTGATGTTGGTCTTGTTAAGACCACAACTGGCAACCGCGTCTTTGGTGCACTCAAGGGAGCTTTGGATGGAGGTCTGGATATTCCTCACAGTGACAAAAGGTTTGCTGGTTTTGATAAGGAGAAAAAAGAGCTTGATGCTGAGGTTCACAGAAAGTATATCTTTGGTGGACATGTTGCTGCCTATATGAAGACATTGATTGAAGATGAACCAGAAAAGTACCAAACACACTTCAGTGAATATATCAAGCGTGGGATTGAAGCCAATGGAATTGAGGAACTGTACAAAAAGGTTCATGCTGCCATTCGTGCTGATCCATCAATCAAAAAGTCTGGGAAGCAGCCACCAAAGGAACACAAGAGGTACAACCTGAAGAAGCTCACCTACGAGGAGAGGAAGACAAAGTTGATTGCCCGCCTTCAAGCTCTCAATTCTGCAGCCGGAGATAGTGAAGAGGATGATGATGAGTGA 906 0.4459 MKAFMKAQKPRAYFKRYQVKFKRRREGKTDYRARIRLINQDKNKYNTPKFRFVVRFTNKDIVAQIVSASIAGDIVLAAAYAHELPQFGLEVGLTNYAAAYCTGLLLARRVLKTLEMDEEYEGNVEATGEDYSVEPAESRRPFRALLDVGLVKTTTGNRVFGALKGALDGGLDIPHSDKRFAGFDKEKKELDAEVHRKYIFGGHVAAYMKTLIEDEPEKYQTHFSEYIKRGIEANGIEELYKKVHAAIRADPSIKKSGKQPPKEHKRYNLKKLTYEERKTKLIARLQALNSAAGDSEEDDDE 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05966 301 PRINTS Ribosomal protein L5 signature 165 184 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Trre5g05966 301 PRINTS Ribosomal protein L5 signature 145 164 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Trre5g05966 301 PRINTS Ribosomal protein L5 signature 207 227 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Trre5g05966 301 PRINTS Ribosomal protein L5 signature 21 40 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Trre5g05966 301 PRINTS Ribosomal protein L5 signature 44 63 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Trre5g05966 301 PRINTS Ribosomal protein L5 signature 85 105 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Trre5g05966 301 Pfam Ribosomal L18 C-terminal region 236 289 IPR025607 -
Trre5g05966 301 SUPERFAMILY Translational machinery components 12 253 - -
Trre5g05966 301 FunFam 60S ribosomal protein L5 2 292 - -
Trre5g05966 301 Gene3D - 2 292 - -
Trre5g05966 301 CDD Ribosomal_L18_L5e 42 171 - -
Trre5g05966 301 Hamap 50S ribosomal protein L18 [rplR]. 15 247 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Trre5g05966 301 PANTHER RIBOSOMAL PROTEIN L5-RELATED 3 291 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Trre5g05966 301 MobiDBLite consensus disorder prediction 251 270 - -
Trre5g05966 301 Pfam Ribosomal large subunit proteins 60S L5, and 50S L18 15 176 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05966 Trre-Chr5 59018151 59019963 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05966 3 293 Cytoplasmic Ribosomal Protein Gene Family AT5G39740 82.818 0.0 504
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05966 K02932 - gmx:100805868 533.102