Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05963 ATGTCTAAAGAAGTGAGCGAAGAAGGTCACCAACCTCATCACCATGGTGGGAAAGACTATGTTGACCCACCACCAGCACCCCTCCTTGACTTCGCTGAAATTAAGCTCTGGTCTTTCTACAGAGCACTCATCGCCGAGTTCATAGCAACACTCCTCTTCCTCTACGTCACCGTCGCAACTGTCATTGGTCACAAAAAACAAACCGGACCATGCGACGGTGTTGGCCTTCTTGGCATAGCATGGTCCTTCGGTGGTATGATCTTTGTCCTTGTCTACTGCACCGCCGGTATCTCCGGTGGCCACATCAACCCTGCAGTCACATTCGGGCTTTTCTTGGCTCGTAAAGTGTCTCTCATAAGAGCGGTATTGTACATGGTAGCGCAGTGTTTGGGTGCTATTTGTGGTGTTGGGTTGGTGAAAGCCTTCATGAAACACCCTTACAACCACCTCGGCGGTGGTGCTAACTCCGTTGCCTCTGGTTACTCCAAGGGCTCTGCTCTCGGTGCTGAGATAATCGGTACTTTTGTCCTTGTTTACACTGTTTTCTCTGCTACTGATCCAAAGAGAAGCGCACGTGACTCTCATGTCCCTGTTTTGGCTCCTTTGCCAATTGGTTTTGCTGTTTTCATGGTTCATCTCGCAACTATACCGATTACCGGTACCGGAATCAACCCTGCAAGGAGTTTTGGTGCTGCTGTTATCTTCAACAATGGTCAAGTTTGGGATGACCATTGGATCTTCTGGGTTGGACCGTTCGTGGGAGCAGCTGCGGCGGCTGCATATCATCAGTACATTCTGAGAGCTGCGGCTATCAAGGCGTTGGGGTCCTTCAGAAGCAATCCAACCAACTAA 852 0.5 MSKEVSEEGHQPHHHGGKDYVDPPPAPLLDFAEIKLWSFYRALIAEFIATLLFLYVTVATVIGHKKQTGPCDGVGLLGIAWSFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVLYMVAQCLGAICGVGLVKAFMKHPYNHLGGGANSVASGYSKGSALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNNGQVWDDHWIFWVGPFVGAAAAAAYHQYILRAAAIKALGSFRSNPTN 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05963 283 MobiDBLite consensus disorder prediction 1 21 - -
Trre5g05963 283 FunFam Probable aquaporin PIP1-2 26 281 - -
Trre5g05963 283 SUPERFAMILY Aquaporin-like 33 267 IPR023271 -
Trre5g05963 283 CDD MIP 41 265 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre5g05963 283 PRINTS Major intrinsic protein family signature 169 187 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre5g05963 283 PRINTS Major intrinsic protein family signature 41 60 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre5g05963 283 PRINTS Major intrinsic protein family signature 120 139 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre5g05963 283 PRINTS Major intrinsic protein family signature 83 107 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre5g05963 283 PRINTS Major intrinsic protein family signature 205 227 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre5g05963 283 PRINTS Major intrinsic protein family signature 245 265 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre5g05963 283 MobiDBLite consensus disorder prediction 1 20 - -
Trre5g05963 283 Pfam Major intrinsic protein 34 262 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre5g05963 283 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 5 272 IPR034294 -
Trre5g05963 283 ProSitePatterns MIP family signature. 101 109 IPR022357 -
Trre5g05963 283 Gene3D Glycerol uptake facilitator protein. 26 283 IPR023271 -
Trre5g05963 283 NCBIfam MIP family channel protein 45 261 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05963 Trre-Chr5 59006889 59007847 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05963 1 283 Major Intrinsic Protein MIP AT4G35100 89.399 0.0 511
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05963 K09872 - thj:104804325 523.087