Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05956 ATGACAGTGAAAGAGAGATGTATTTTGGTGGGAATTAGAATTGATAGCCATAGCAGACATGTTCTCAATTGGGCTATAGTCAAAGTTGCTCAACCTGGTGATTCTGTTATAGCAATCCATGTTGTTACAACAACTCCAGATCACGTTTCTTCTGAAAGCAAGGCCTTGGTAGATGATTATTTAGAGGTTTATGAAGGGTTATGCGATGCAAAAAAGGTAGCTCTCTCTGCTCATATCTTCACAGGAAGATCTATTCGAAATATTCTCCTCAGAGAAGCAAAAAACAGTGGTGCTATTGCTCTAGTGGTAGGGGGTGGGGCATCAACGGCTAAATATTGCGCGAAACGACTACCAGACAGCACTGATGTTATCGGTATCCAGGATGCACGAATTGTGTTCCAAAGGTGCACCGATAATAAACAACTAATAGGTGGTGTTATAGATGATCCAAGACCAAGTCTTATTAGCAAGGTGGTCCAGTCTGCATTTGAAGACAACTTGGGGAATGAGAAATCAAGAAGCCAACAAGATAATACAAAGTTGGAGGAAGAATCATTTAAAGAAGAGATGAATGTGTCATCAAGATTATCAACATCGCAGAAACTTGGATGGCCGCTTCTGCGCAGGGCGCACACAGAAATGTCGAGGGACATGTCTGTAGTACAATGGGCAATGAACTTACCAGATCGTTCAACACACATTTCATCTCAAATTAAAGATCAGAGCTATAGAAAAAGTAATAGTTTCAATAGTTGCAAGTGGTTCATCTTTGAGGTTCTTGATTCTTGCACTCGTCAATTCTCTGAAGAAAATGTGATTGGGATTGGAGGGAGCAATCGTGTGTACAAAGGAACCCTCCCCGATGGAAAGCCGGTAGCAGTTAAAGTTATGCAGTCGTCAAAACAAGCCTTCAAAGATTTTGCACTTGAAGTGGAAATAATGTCCTCGTTGAACCACACATTCATTGCCCCTCTACTTGGAATTTGCATCAAGGACGAGACTTTGATATCTGTTTATGATTATTTTCCGCAAGGAACCTTGGACCAAAATCTACGCGGTAAGAACAAGGATGGATCTATGCTGTCATGGGAACACAGATTTAAGATAGCTGTTGGGATTGGCGAAGCACTGAATTACCTGCACAATCAAACCTCCAAGCCTATTATACATAGAGATGTCAAGTCTTCCAACATTCTTCTTTCCCATTGGTTTGAGCCACATTTATCGGATTTTGGACTTGCCATGTGGGGACCAACAAGTTCATCTTTTGTGATACAAGATGATGTGGTAGGAAGCTTTGGTTATCTTGCACCAGAATATTTCATGTATGGCAAGGTCAGTGACAAAATAGATGTATATGCCTTTGGTGTAGTCCTACTTGAACTTATATCAGGGAGGGAACCAATTGACTCCAAAACTTGCAAAGAACATGAGAGTTTGGTCACATGGGCAAAACCAATTTTAGAGAGTGGGGATGTGAAAAGCTTATTGGATCCAAATTTGGAAGGGAATAAGTTTGATATAGCCCAAATAAACAAAATGGTTCTGGCAGCATCTCTATGCATTACACAGTCTGCACGTCTTCGTCCTACGATGAATCAGGTACTGAAAATCTTAAAAGGATGTGATGAGAAAGTCGAAAACTTATTTAAGCCTCACAAAGGTGATCGTGATCATTCGGAAAATCAAGAAAATATTGATGATGAAGTCTATCCAAATTCAAGTGCAAAATTGCATTTGAGCCTTGCATTACTTGATGTTGACAACGATACTGCATCATATAGTAGCATAGAGAACAGCAATAATAGTGAAAATTTGAAAGAACCATGGAGCAGATCATCTAGTTTCAATTAA 1854 0.3997 MTVKERCILVGIRIDSHSRHVLNWAIVKVAQPGDSVIAIHVVTTTPDHVSSESKALVDDYLEVYEGLCDAKKVALSAHIFTGRSIRNILLREAKNSGAIALVVGGGASTAKYCAKRLPDSTDVIGIQDARIVFQRCTDNKQLIGGVIDDPRPSLISKVVQSAFEDNLGNEKSRSQQDNTKLEEESFKEEMNVSSRLSTSQKLGWPLLRRAHTEMSRDMSVVQWAMNLPDRSTHISSQIKDQSYRKSNSFNSCKWFIFEVLDSCTRQFSEENVIGIGGSNRVYKGTLPDGKPVAVKVMQSSKQAFKDFALEVEIMSSLNHTFIAPLLGICIKDETLISVYDYFPQGTLDQNLRGKNKDGSMLSWEHRFKIAVGIGEALNYLHNQTSKPIIHRDVKSSNILLSHWFEPHLSDFGLAMWGPTSSSFVIQDDVVGSFGYLAPEYFMYGKVSDKIDVYAFGVVLLELISGREPIDSKTCKEHESLVTWAKPILESGDVKSLLDPNLEGNKFDIAQINKMVLAASLCITQSARLRPTMNQVLKILKGCDEKVENLFKPHKGDRDHSENQENIDDEVYPNSSAKLHLSLALLDVDNDTASYSSIENSNNSENLKEPWSRSSSFN 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05956 617 Pfam Protein kinase domain 268 536 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g05956 617 SUPERFAMILY Protein kinase-like (PK-like) 247 539 IPR011009 -
Trre5g05956 617 ProSitePatterns Serine/Threonine protein kinases active-site signature. 388 400 IPR008271 GO:0004672|GO:0006468
Trre5g05956 617 MobiDBLite consensus disorder prediction 166 192 - -
Trre5g05956 617 PANTHER OS08G0249100 PROTEIN 156 566 IPR046958 -
Trre5g05956 617 CDD USP_Like 8 121 - -
Trre5g05956 617 Gene3D Phosphorylase Kinase; domain 1 229 341 - -
Trre5g05956 617 SMART serkin_6 267 538 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g05956 617 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 237 341 - -
Trre5g05956 617 FunFam Putative receptor-like serine/threonine-protein kinase 342 554 - -
Trre5g05956 617 Gene3D HUPs 2 114 IPR014729 -
Trre5g05956 617 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 7 113 - -
Trre5g05956 617 Gene3D Transferase(Phosphotransferase) domain 1 342 568 - -
Trre5g05956 617 MobiDBLite consensus disorder prediction 175 190 - -
Trre5g05956 617 Coils Coil 164 184 - -
Trre5g05956 617 MobiDBLite consensus disorder prediction 595 617 - -
Trre5g05956 617 ProSiteProfiles Protein kinase domain profile. 267 550 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05956 Trre-Chr5 58959378 58962121 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05956 250 552 Trihelix Transcription Factor Family AT5G38560 41.158 1.02e-69 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Trre5g05956 Pkinase 6.9e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05956 - - tpra:123897148 1136.71