Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05955 ATGTCGTCAAAGCATGATGAAGACTACGACGACCTGGATCTCTTGCTTTCTCTTCAGAACGACACTGTTCTTGAAACCCCTCCCGATTCTCCCTCTCCACTTGACGATGTCGACGATGACGACGTGTCGCCCAGACACAAGAAGCAAAGGGAGAAACCCGACATGTCTGTTTTCAGAGATGCCGTTCAAGATTGCCTTTTCCACCAACCCTCTAACCCTAACCCTAACCCTAAATCAATTACTAAACCCCCTTCCAATGACGATATTGACAAATTCTCTGGTCTTCGCATAAGGAACCAATGTTTAACCCCTGCTGAATTTAGGGAATGTGTTCAAGACATTCGTTTTGTTCGCCTACCTGTCATCAAGAATTTGGTGAATGGGGATACTTTCTCTGGAAGTTGGGTAACTGTTGGAGTGTTGACTGAGAAAGGGATTCAGAAAACAAGTTCAAATGGGAAGAGCTACTGCATTTGGAAAATTGGCTGTTTGGATGAAAATACCGTTTCTCTTTTCTTGTTTGGAGATGCTTATAAGAGGAATTGCCACGAGCCTGCTGGAACCGTCTTTGCACTCTTCAATGCTGCTGTACGCAAGGATGCCAAGGGTAATGGTTTTTCTTTGAGTATATACTCCCCTAACCAAATTATGAAGATGGGAACATCTCTTGATTATGGAGTTTGCAAAGGGAAAAGAGCAGATGGGATGGCTTGTACATTGGTCATAAATAAGCGTCAGGGAACCTATTGTAAATATCACAAATCAAAATCATCAGAGAAATATTCCACAGGGCGAACTGAACTCAAGGGAGGAAACTTAAGAACATCATTTAGGCCAAGAGGTTATCTCAAGTCAGAAGGGATATACTTAGTTGACCCCCTTGCTGACAAAACAAACTTGAAAAAGTCTAAGCCACTGAAATTGTTATCCGTCGATGGTCTCAAAAAGGCATTGAGCAATGCAGGAAAAGTAACAACAACTTCACACTCGCAAGGAATTAGATTTCTTTCTGAGGTTACAGGCAAAGCTGATCAAAAAATGATGAAAAATGAACCAAAGTCTCAAAATAAACAAAGCAAATATGCAGAGAAGAGGAAATCATCTTCTGTGAATATGGGACACTCTTCTCTCACAAGAAACCGACAGTTAGATGTAAAAAGAATAAAAACAGAGGGGCAAGGTTTGGTCGATAAAACCACAAAGAGTACAGGAAAGATGATTGAACTAGATCTTCTTAGTTCGGATGAGGACTTCTGA 1257 0.4129 MSSKHDEDYDDLDLLLSLQNDTVLETPPDSPSPLDDVDDDDVSPRHKKQREKPDMSVFRDAVQDCLFHQPSNPNPNPKSITKPPSNDDIDKFSGLRIRNQCLTPAEFRECVQDIRFVRLPVIKNLVNGDTFSGSWVTVGVLTEKGIQKTSSNGKSYCIWKIGCLDENTVSLFLFGDAYKRNCHEPAGTVFALFNAAVRKDAKGNGFSLSIYSPNQIMKMGTSLDYGVCKGKRADGMACTLVINKRQGTYCKYHKSKSSEKYSTGRTELKGGNLRTSFRPRGYLKSEGIYLVDPLADKTNLKKSKPLKLLSVDGLKKALSNAGKVTTTSHSQGIRFLSEVTGKADQKMMKNEPKSQNKQSKYAEKRKSSSVNMGHSSLTRNRQLDVKRIKTEGQGLVDKTTKSTGKMIELDLLSSDEDF 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05955 418 MobiDBLite consensus disorder prediction 365 379 - -
Trre5g05955 418 MobiDBLite consensus disorder prediction 38 55 - -
Trre5g05955 418 MobiDBLite consensus disorder prediction 341 400 - -
Trre5g05955 418 MobiDBLite consensus disorder prediction 344 364 - -
Trre5g05955 418 Gene3D - 82 254 IPR012340 -
Trre5g05955 418 MobiDBLite consensus disorder prediction 380 394 - -
Trre5g05955 418 MobiDBLite consensus disorder prediction 1 55 - -
Trre5g05955 418 FunFam DNA replication licensing factor mcm10 81 255 - -
Trre5g05955 418 PANTHER PROTEIN MCM10 HOMOLOG 27 380 IPR040184 GO:0003690|GO:0003697|GO:0006270
Trre5g05955 418 Pfam Primase zinc finger 220 265 IPR015408 GO:0005634|GO:0006260
Trre5g05955 418 MobiDBLite consensus disorder prediction 67 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05955 Trre-Chr5 58953801 58956303 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05955 23 417 Core DNA Replication Machinery Family AT2G20980 54.478 2.14e-131 382
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05955 K10736 - gmx:100527758 513.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05955 5 58953801 58956303 Trre5g05955 5 58953801 58956303 ECH