Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05947 ATGGGGGAATTGGGACATGTTCTTAGAAACTTAGCAAGTGAGGATGTTTATCCCTCAAGAACGGTGATTTTACTGAAATCCCTACAAAATCATTTGTTGAAAGCATCAATCTCAGAAGATACGCTAGAAATTCTGGAGGTACTAGAAAAACATCTACTCGAAGGTTCAAACCCAATAACCACCACTATGAAATCTGCTTATTGCAGCGTTGCGGTGGAGTGTACTTTGAAATACATTGAAGCAAAAGCATCACACCCAACCTACCTCCAAGCTGTGGATGGGATATGGAGAGGTAGGATTGTAGCCATAGCGAGTCGTGGGAGTCATTTGTTCTCTCATGATTTGAAAAACTGGAAAACTCAATTCGAGAATTCCCTTTTGGACATCAACATTAATTCGTTTGTTTCCCTCCCAGAAGATACTCGAATGGAAGCACTTCACAAGGTACAAATGTTTTTTGATGAAGCATGGGATAACTTCTGTCCTTCTTTTCTTCATCCAGCGGCTCAGATTGTCACTGACTCCCAACAACGCCGGAGAGACATGTATGCTGCTCTTGTTGATGATGGGAGTACGGATACCACAACCTCTTGTAGCAAAATCGCCTCTATGCCGATTGACAAATCTCTTCAATGTAGTTCTATGGAATTGGAAAACCAAGAACTTGAGGATATGAATCAGGAGGCACAATCTGAATACCACAATGCAAATGCATATGTAGCCAACTCACAAGATGATTGCCAAAATATTAACAACAACGAGGCTAATCTTAAAGAGGCTGCTTGTAGTCATGAGGGAGGAACAACAAGCAACACAGTTGGAGTTACTTTGCGTCGTTCTAAGAGGAACAACTCTTCTCCATTGAAGGACCATGAGCCAACTGAAATTACTAAAAGGAAAAGAAATATCTGGAGTCAATCAGAAGTGGATACTCTAAGGTCCGGAGTATTGAAATTTGGCAGAAAATGGGAAACAATCCGTAATTTTTATGGATATGAAAAGAGAACCGCAGTTGATCTGAAGGATAAGTGGACAAACATACTGAAGTCTGAAGCCAAACAAAACAAAGGCAAACGAAACATTTGCAAATAG 1092 0.4057 MGELGHVLRNLASEDVYPSRTVILLKSLQNHLLKASISEDTLEILEVLEKHLLEGSNPITTTMKSAYCSVAVECTLKYIEAKASHPTYLQAVDGIWRGRIVAIASRGSHLFSHDLKNWKTQFENSLLDININSFVSLPEDTRMEALHKVQMFFDEAWDNFCPSFLHPAAQIVTDSQQRRRDMYAALVDDGSTDTTTSCSKIASMPIDKSLQCSSMELENQELEDMNQEAQSEYHNANAYVANSQDDCQNINNNEANLKEAACSHEGGTTSNTVGVTLRRSKRNNSSPLKDHEPTEITKRKRNIWSQSEVDTLRSGVLKFGRKWETIRNFYGYEKRTAVDLKDKWTNILKSEAKQNKGKRNICK 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05947 363 PANTHER MYB TRANSCRIPTION FACTOR 18 349 - -
Trre5g05947 363 Pfam Myb-like DNA-binding domain 304 355 - -
Trre5g05947 363 ProSiteProfiles Myb-like domain profile. 296 348 IPR001005 -
Trre5g05947 363 Gene3D - 290 362 - -
Trre5g05947 363 SMART sant 300 350 IPR001005 -
Trre5g05947 363 Coils Coil 212 260 - -
Trre5g05947 363 CDD SANT_TRF 304 349 - -
Trre5g05947 363 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 298 352 IPR017930 -
Trre5g05947 363 SUPERFAMILY Homeodomain-like 298 353 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05947 Trre-Chr5 58903853 58905682 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05947 8 348 Single Myb Histone (SMH) Gene Family AT1G15720 26.016 7.30e-20 88.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre5g05947 Myb_DNA-bind_6 2.3e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05947 - K11111 psat:127081272 246.514