Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05945 ATGTCTAACCCTAAAGTTTTCTTTGACATGACCGTCGGGGGCCAACCCGCCGGCCGTATTGTTATGGAGCTTTACGCCGACACGACTCCTCTCACCGCCGATAATTTCCGTTCACTTTGCACAGGCGAGAAAGGAGTCGGTCGTAGCGGAAAGCCTCTTCATTACAAAGGCTCTACCTTCCACCGTGTCATCCCTAATTTCATGTGTCAGGGAGGTGACTTCACTGCCGGTAACGGTACCGGTGGAGAGTCAATCTATGGTGCCAAATTCGCCGATGAGAATTTCACCAAGACGCACACCGGTCCCGGCGTGCTTTCGATGGCGAATGCTGGTCCTGGTACAAATGGATCTCAATTCTTTATTTGCACGACAAAGACGGAGTGGCTTGATGGAAAACATGTTGTTTTCGGTCAGGTGATTGAAGGATTGGATGTGGTGAAGGAGATCGAGAAAGTAGGGTCCAGCTCCGGCAAGACGTCGAAGGCGGTGGTTATCGCTGACTGCGGCCAACTCTGA 516 0.5174 MSNPKVFFDMTVGGQPAGRIVMELYADTTPLTADNFRSLCTGEKGVGRSGKPLHYKGSTFHRVIPNFMCQGGDFTAGNGTGGESIYGAKFADENFTKTHTGPGVLSMANAGPGTNGSQFFICTTKTEWLDGKHVVFGQVIEGLDVVKEIEKVGSSSGKTSKAVVIADCGQL 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05945 171 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 7 169 IPR002130 GO:0000413|GO:0003755
Trre5g05945 171 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 170 IPR002130 GO:0000413|GO:0003755
Trre5g05945 171 SUPERFAMILY Cyclophilin-like 2 171 IPR029000 -
Trre5g05945 171 Gene3D - 1 171 IPR029000 -
Trre5g05945 171 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 131 146 IPR002130 GO:0000413|GO:0003755
Trre5g05945 171 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 24 39 IPR002130 GO:0000413|GO:0003755
Trre5g05945 171 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 103 118 IPR002130 GO:0000413|GO:0003755
Trre5g05945 171 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 118 130 IPR002130 GO:0000413|GO:0003755
Trre5g05945 171 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 60 72 IPR002130 GO:0000413|GO:0003755
Trre5g05945 171 FunFam Peptidyl-prolyl cis-trans isomerase 1 171 - -
Trre5g05945 171 CDD cyclophilin_ABH_like 4 169 - -
Trre5g05945 171 PIRSF Peptidylpro_ismrse 1 171 IPR024936 GO:0003755
Trre5g05945 171 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 5 171 - -
Trre5g05945 171 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 55 72 IPR020892 GO:0003755|GO:0006457
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05945 Trre-Chr5 58895948 58896463 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05945 18 152 U-box Gene Family AT5G67530 47.794 1.80e-29 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05945 K01802 - gmx:106795232 327.405