Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05940 ATGGTGCTGATTATTCATCATGTATATCCTCTTTCGGCACTCAAGTTGATTTTGTTAATTACTACTCTCTTCACTTTATCAGATTGCTATGACCCTTTGGATCCAAATGGGAACATTTCTATAACTTTTGACATTAACAACCGTGTAGACAACAATGGATATATGGCAAGAGTGACTCTTGAAAACTATCATCAATATCGGCATGTAGACAAACCAGGGTGGAAACTAGGATGGACATGGGCTAACAATGAGGTGATATGGTCAATGAGTGGTGCCACTGTAACTGATAGAGGTGATTGTTCATCTTACGGTTCTCAGATGCCACATTCATGCAAGAAAGATCCAATCATAGTTGATATAGCTCAGGATGTTACACAAAACAGGTCAGACGGTTGTTGTCGCGGTGGCCGCCTCTCTGCACGTGCCGTTGATTATTTCAATTCATTCTCTTCATTTGAATTTGAAGTAAGAAATGCGGGGGGAAAGGAAAATTCACTTGGACAAGCACCTAATAATGTTACATTCATGGCACCTGGTCCTGGTTACACTTGTAGCCCTTTTATGCTTACGCATCCCTCAGTGTCCTTAGAGTTAGGAGGACAAAGACAAGTTCCAGTTGCAAAAACTTGGAAGTCAACATGTACATACTCCAGTTTCTTGGCAAACAAGTCACCAGTATGTTGTGTTTCCCTCTCAACATTTTACAATCCTATTATCACACCATGCCGTAATTGCACTTGTGGTGGATGCAGAAAAGCAGATAAAAATACACTCTCTTGCATAAGGCCAGGTGATCCTTTGCGAGGGTCGAATGATGAAAACAACATAATTGAATGCACTGACCATATGTGTCCGATTCGAGTCCATTGGCATATCAAGAACAATTATATGAATCAGTGGAGAGTGAAGCTTACAATTTCTAACTACAACTTCAATAGAAACTACTCTAACTGGAATGTGCTGATTCAACATCCTGGTTTCAACAAAAAAGCAACAACTTACAGCTTCAATAGCACTAAACTTTCGACTCTTGGGATCCAAGATGATGGAGTTGCTCTATTTTGGGGGATAGATTATTACAACAGTGAATTATTGCATTCTGATAAGGATAGAATTGGTTCAGTGACAACAGAAGTACTAATGGAAAAAGATCCAAGTTCCTTCACATTGCAAAATGGATGGGCATTCCCAAGAAGAATATATTTCAACGGCGAAAATTGCGACATGCCTTTACCTGACACATTTCCTATGTTACCAAATGGTAACTCCAGTTTAAGACCTAATTGTCTTACTTTCAATTTTTCATTAATTTGTTTATTACTTGTCCTATTAGTACTGAGGTAG 1344 0.3899 MVLIIHHVYPLSALKLILLITTLFTLSDCYDPLDPNGNISITFDINNRVDNNGYMARVTLENYHQYRHVDKPGWKLGWTWANNEVIWSMSGATVTDRGDCSSYGSQMPHSCKKDPIIVDIAQDVTQNRSDGCCRGGRLSARAVDYFNSFSSFEFEVRNAGGKENSLGQAPNNVTFMAPGPGYTCSPFMLTHPSVSLELGGQRQVPVAKTWKSTCTYSSFLANKSPVCCVSLSTFYNPIITPCRNCTCGGCRKADKNTLSCIRPGDPLRGSNDENNIIECTDHMCPIRVHWHIKNNYMNQWRVKLTISNYNFNRNYSNWNVLIQHPGFNKKATTYSFNSTKLSTLGIQDDGVALFWGIDYYNSELLHSDKDRIGSVTTEVLMEKDPSSFTLQNGWAFPRRIYFNGENCDMPLPDTFPMLPNGNSSLRPNCLTFNFSLICLLLVLLVLR 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05940 447 PANTHER PROTEIN COBRA 18 429 IPR006918 GO:0010215|GO:0016020
Trre5g05940 447 PIRSF COBRA 1 447 IPR006918 GO:0010215|GO:0016020
Trre5g05940 447 Pfam COBRA-like protein 54 217 IPR006918 GO:0010215|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05940 Trre-Chr5 58863219 58865392 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05940 28 446 COBRA Gene Family AT3G29810 46.838 4.04e-135 394
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05940 - - ccaj:109801855 664.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05940 5 58863219 58865392 Trre5g05940 5 58863219 58865392 ECH