Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05924 ATGGCAGCAGCAACAAATCTCTATACCCTCTCCAACCCTAAACTCTCGTTTTCTTCTTCTACACCTTTCAAATATTCAACCACAAACCCTTGTTTTTTCCCCAACAAAACTCTTCTCAATAACTCAAACCACAATACAATAACACTTTCTCACTCCCACAACTACAAAACACTAACTCCATGCAGCAACAACAACAACCTTAATATTGATGATGATGACGACGAAAAGCCTCGTGAAGAATGCGGCGTTGTCGGTATCTACGGCGATCCAGAAGCTTCTCGTCTCTGTTATCTCGCTCTCCACGCTCTTCAACACCGTGGACAAGAAGGTGCTGGTATTGTAGCCGTCAACAATAGCATCCTTCAAACCATTACCGGCGTTGGTCTCGTTTCCGAAGTTTTCAACGACGCCAAACTCCGTCAATTACCGGGAACCTTAGCCATCGGTCATGTCCGTTACTCAACCGCAGGACAATCTATGCTCAAAAACGTTCAACCGTTTGTTGCAGGTTACAGGTTTGGTTCAGTTGGTGTTGCTCACAATGGAAATTTCGTGAATTACCGTTCTTTAAGAAATGAACTTGAAGAATCTGGTTCAATTTTCAACACTACTTCTGATACTGAAGTTTTACTTCATCTTATTGCAATTTCAACTCATAGACCTTTTATAGCTAGAGTTGTTGATGCTTGTGAAAAGGTTAAAGGTGCTTTTTCAATTGTGTTTGTTACTGAAGATAAACTTGTTGCTGTTAGAGATCCTTTCGGTTTTCGACCTTTGGTTATGGGAAGAAGAAGTAATGGTGCTATTGTTTTTGCTTCTGAAACATGTGCTCTTGATTTGATTGAAGCTACTTATGAGAGACAGGTTCATCCTGGCGAAGTCGTGGTTGTGGATAAAAATGGTATTCAATCTCATTGTCTTGTTTCTCATCCAGAACCAAAACAATGTATTTTTGAACATATTTATTTTTCACTGCCAAATTCTGTTGTGTTTGGGAAATCTGTTTATGAATCAAGAAGATTGTTTGGTGAAATATTGGCTAGTGAGAGTCCTGTTGATTGTGATGTTGTTATAGCTGTTCCTGATTCTGGTGTTGTAGCTGCACTTGGTTATGCTGCAAAAGCTGGTGTTCCTTTTCAACAGGGTTTGATTAGGTCACACTATGTTGGTAGAACTTTCATTGAGCCATCACAGAAGATTAGAGATTTTGGTGTGAAGTTGAAACTTTCACCGGTTCGCGCTGTTCTTGAAGGGAAAAGAGTTGTGGTTGTTGATGATTCAATTGTGAGGGGAACAACATCATCTAAAATTGTGAGGCTGTTAAAAGAAGCTGGTGCTAAAGAAGTTCATATGAGAATAGCATGTCCACCAATTATTGGATCTTGTTATTATGGTGTGGATACACCTAGTGCTGGTGAGTTGATATCTAATAGGATGAGTGTGGATGAGATAAAAGAGTTTATTGGATGTGATTCACTTGCTTTTCTACCTCTTGATAGTTTGAAGAAATTGTTGGCTAATGATTCTTCTAATTTTTGTTATGCTTGTTTCACTGGGAAATATCCTGTTGAACCTGATGAACTTAAATAA 1590 0.3906 MAAATNLYTLSNPKLSFSSSTPFKYSTTNPCFFPNKTLLNNSNHNTITLSHSHNYKTLTPCSNNNNLNIDDDDDEKPREECGVVGIYGDPEASRLCYLALHALQHRGQEGAGIVAVNNSILQTITGVGLVSEVFNDAKLRQLPGTLAIGHVRYSTAGQSMLKNVQPFVAGYRFGSVGVAHNGNFVNYRSLRNELEESGSIFNTTSDTEVLLHLIAISTHRPFIARVVDACEKVKGAFSIVFVTEDKLVAVRDPFGFRPLVMGRRSNGAIVFASETCALDLIEATYERQVHPGEVVVVDKNGIQSHCLVSHPEPKQCIFEHIYFSLPNSVVFGKSVYESRRLFGEILASESPVDCDVVIAVPDSGVVAALGYAAKAGVPFQQGLIRSHYVGRTFIEPSQKIRDFGVKLKLSPVRAVLEGKRVVVVDDSIVRGTTSSKIVRLLKEAGAKEVHMRIACPPIIGSCYYGVDTPSAGELISNRMSVDEIKEFIGCDSLAFLPLDSLKKLLANDSSNFCYACFTGKYPVEPDELK 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05924 529 CDD PRTases_typeI 338 454 IPR000836 -
Trre5g05924 529 PANTHER AMIDOPHOSPHORIBOSYLTRANSFERASE 79 527 - -
Trre5g05924 529 PIRSF Pur1 77 528 IPR005854 GO:0004044|GO:0009113
Trre5g05924 529 Hamap Amidophosphoribosyltransferase [purF]. 80 521 IPR005854 GO:0004044|GO:0009113
Trre5g05924 529 Pfam Phosphoribosyl transferase domain 339 451 IPR000836 -
Trre5g05924 529 SUPERFAMILY PRTase-like 316 525 IPR029057 -
Trre5g05924 529 CDD GPATase_N 81 331 IPR035584 -
Trre5g05924 529 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 81 522 IPR029055 -
Trre5g05924 529 NCBIfam amidophosphoribosyltransferase 81 522 IPR005854 GO:0004044|GO:0009113
Trre5g05924 529 Gene3D - 340 504 IPR029057 -
Trre5g05924 529 ProSiteProfiles Glutamine amidotransferase type 2 domain profile. 81 300 IPR017932 -
Trre5g05924 529 Pfam Glutamine amidotransferase domain 159 278 IPR017932 -
Trre5g05924 529 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 81 304 IPR029055 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05924 Trre-Chr5 58743079 58744668 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05924 70 529 PRT Gene Family AT4G34740 84.165 0.0 804
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05924 K00764 - gmx:100791919 822.387