Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05923 ATGGACGGCGGCGAGGACAATTCTTCTCACCAGGGAAGTTCGTTAGTCATTCATCAAACCACCGAACAACTAATTGCCAGGTGCATAGCTCCCGTCAAAAAGGACTTCATTCGTCCACCTCCCGATAGAACAACTTCCTCTCTAAACGACACCGTTTCCATCCCAAACGATAAACCCCCTGTTCTCGCCAAGGAGAAGAAATCTAAACGCCAACTCAAACGCGAACGTCGTCAGGACCAAAAATCAACAAAAAATCTTTGTCCAGAAATTTCAAAGTCAGGTGATGTTAATTCGTGTCGATATCAAGATAAGTGTAGATTCAGCCATGATATAGAAGCTTTTAAGGCGCAGAAACCGGGTGATTTGGAAGGTGAATGTCCTTTCTTGAAATCTGAAGGTTCTTGCCCTTATGGTTTATCTTGTAGATTTTTAAGTACTCATGAAGAGGGTAAGCCATTATCTTCAAATGGATTGGAGAAAAGGTCTGAAGTTAATGGTTTTAGCAAAGATGTTCAAAAGCTTTTATGGAAAAATAAGATGACCTACCCCAAAGCTGATGCTAAACTCAAAGCTCTTGGCCTCTTTAGTAAGCCAAAAGTGAATAACTTGGAAAACAAAGATGGTGGTGGCAAATATGTTCAGTCTGATGAAAATGGTTCTTGTGCGGTTGCATCTGAATTGGAAAACAATGATGGTGTTGACAAATGCCATCTGTCTGATGATGATGGCTCTTGTGGGGTTGACGCTGACTCAGGTTCTAAGTTAGAATGCTCTGCAGAAGTTAAAAAAGACGATGGCATTACTAGAGAACTTGAATCTGATATAATTTGTCCCCTAAAAAGAAGAAAAACTGAAGAAAATTGTGAAGATGTTGGGACAGAAAATGAAGGTGTGAGTGTTGTTGACCAAAATGTTGATGGAAGCTGCATAAAATCTGAACCAGAGGCAGGAACTGAAGCTATAACCCCAGAAACTGATCTAAGCTTGAAGTTGCACTCACGTGAAAAGAAGCTTATTGATTTCAGGGAGAAGTTGTATCTTGCACCCTTGACCACTGTTGGAAATCTCCCATTCCGGAGAGTTTGCAAAGTATTAGGAGCTGACGTAACATGTGGTGAAATGGCAATGTGCACAAATCTTTTACAGGGTCAAGCTTCTGAATGGGCATTGCTGAGACGCCATTCATCTGAAGAGTTATTTGGTGTACAAATCTGTGGTGCATATCCAGATACTGTGGCACGGACAGTTGAACTAATAGAAAAGGAATGTACAGTAGATTTCATTGATATAAATATGGGTTGCCCTATTGACATTGTTGTGAATAAGGGTGCTGGATCAGCTCTTCTTACAAAACCAATGCGCATGAAAAGTGTTGTAGAAGTAGCTTCAGGCACAGTCGATATACCAATAACTATCAAGGTACGGACAGCTTATTTTGAAGGGAAGAATCGTATCGACTCTCTGATAGCAGACTTTAGCTCTTGGGGAGCTAGTGCAGTGACAATACACGGCAGGTCACGGCAACAACGCTACAGCAAGCTTGCTGATTGGGATTATGTATATCAGTGTACCAAGAAAGCCCCTAATAATTTGCAAGTAGTGGGGAATGGAGATGTTTTTTCATTCATAGACTGGAACAGCCACAAAACTGAATGTCCTGAACTTGCTACGTGCATGATTGCCCGTGGTGCACTTATTAAACCTTGGTTATTTACGGAGATAAAGGAACAAAGACATTGGGATATCAGTTCTGGTGAGCGGCTAAATATTTTCAAAGATTTTGTGAATTTTGGTCTTCAACATTGGGGTTCAGATACAAAAGGGGTGGAGACAACTAGGCGATTCTTGTTGGAATGGCTTAGCTATACTTGTAGGTACATACCTGTTGGCCTTTTGGAAGTGGTTCCACAGCGAATAAATTGGCGCCCACCATCTTACTATGGGCGTGATGACCTTGAGACACTGATGGCCTCAGACTCTGCAGCCGACTGGGTACGTTTATCAGAGATGTTACTTGGCAAAGTTCCAGAAGGCTTTACTTTTGCACCGAAGCATAAATCAAATGCTTACGATAGAGCTGAAAATGGTTAA 2091 0.4161 MDGGEDNSSHQGSSLVIHQTTEQLIARCIAPVKKDFIRPPPDRTTSSLNDTVSIPNDKPPVLAKEKKSKRQLKRERRQDQKSTKNLCPEISKSGDVNSCRYQDKCRFSHDIEAFKAQKPGDLEGECPFLKSEGSCPYGLSCRFLSTHEEGKPLSSNGLEKRSEVNGFSKDVQKLLWKNKMTYPKADAKLKALGLFSKPKVNNLENKDGGGKYVQSDENGSCAVASELENNDGVDKCHLSDDDGSCGVDADSGSKLECSAEVKKDDGITRELESDIICPLKRRKTEENCEDVGTENEGVSVVDQNVDGSCIKSEPEAGTEAITPETDLSLKLHSREKKLIDFREKLYLAPLTTVGNLPFRRVCKVLGADVTCGEMAMCTNLLQGQASEWALLRRHSSEELFGVQICGAYPDTVARTVELIEKECTVDFIDINMGCPIDIVVNKGAGSALLTKPMRMKSVVEVASGTVDIPITIKVRTAYFEGKNRIDSLIADFSSWGASAVTIHGRSRQQRYSKLADWDYVYQCTKKAPNNLQVVGNGDVFSFIDWNSHKTECPELATCMIARGALIKPWLFTEIKEQRHWDISSGERLNIFKDFVNFGLQHWGSDTKGVETTRRFLLEWLSYTCRYIPVGLLEVVPQRINWRPPSYYGRDDLETLMASDSAADWVRLSEMLLGKVPEGFTFAPKHKSNAYDRAENG 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05923 696 Gene3D Aldolase class I 339 582 IPR013785 -
Trre5g05923 696 Pfam CCCH-type zinc finger 86 110 IPR041367 -
Trre5g05923 696 ProSiteProfiles Zinc finger C3H1-type profile. 125 150 IPR000571 GO:0046872
Trre5g05923 696 PANTHER TRNA-DIHYDROURIDINE(47) SYNTHASE [NAD(P)(+)]-LIKE 20 690 - -
Trre5g05923 696 ProSiteProfiles Zinc finger C3H1-type profile. 81 112 IPR000571 GO:0046872
Trre5g05923 696 FunFam tRNA-dihydrouridine(47) synthase [NAD(P)(+)] 340 582 - -
Trre5g05923 696 Pfam Dihydrouridine synthase (Dus) 347 581 IPR035587 -
Trre5g05923 696 ProSitePatterns Uncharacterized protein family UPF0034 signature. 428 446 IPR018517 GO:0008033|GO:0017150|GO:0050660
Trre5g05923 696 CDD DUS_like_FMN 344 579 IPR035587 -
Trre5g05923 696 SMART c3hfinal6 82 111 IPR000571 GO:0046872
Trre5g05923 696 SMART c3hfinal6 122 149 IPR000571 GO:0046872
Trre5g05923 696 FunFam tRNA-dihydrouridine(47) synthase [NAD(P)(+)] 77 156 - -
Trre5g05923 696 MobiDBLite consensus disorder prediction 33 89 - -
Trre5g05923 696 Gene3D - 76 156 - -
Trre5g05923 696 SUPERFAMILY FMN-linked oxidoreductases 344 657 - -
Trre5g05923 696 Coils Coil 62 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05923 Trre-Chr5 58736604 58741492 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Trre5g05923 Dus 2.3e-49 CL0036
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05923 K05544 - gmx:100783494 1088.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05923 5 58736604 58741492 Trre5g05923 5 58736604 58741492 ECH