Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05917 ATGGCTGCTGAAGAAGACGAAGCTTCACGTAATCAATTTCCACCTCCTCTCCAACAACCCTCCGATTCTCCGCCGCCTGACCTCCCTATCAATGCTGACATCCACACCGCCGGAGAGCTTGAGGCTGTGATTACAGATGAGACGAATGATGCTGCCGTAAACACAGAGGTTGTTGCTGTTGTTGATGACGTGGCACCGGCTGAGGGCGGTGAAATGCATGCGATGGACATGGATGGTATTGAAGATGAAATTGCTGTGGAGGAAGAGAAAGGGGATGAAGGAACTGACGTTGATTTGGAACGTGAGAATGTGGAAGAAGCCGAAGCCAATTTGATAATCCAAGAGGAGGAGGTTCAAATTAGGAATGATGAAAACACAGATGAAGCTCCTCTGGTGGGAGACGAAGAAGAAGAAGACAACGATGAAAAGGAAGAAGACGAGAAGGAAGAAGAAGGAGATGATGTAGAAGAAGACGAGAAGGTAGAAGAAGGAGAAGAATTAGAAGAAGAAGAAGGAGAACAAGATCAAGAGCAGGAAGGAGAAGGAGAAGAAGAAGAAGAAGAAGCTGAAGTTGATGGTGATGGTGGTTTGACAGAAGATAAAGAGGCTGCTGAGGAGATGGAGGTGGCAGAGGAGGAGGAGGAGGAGCAGAGTGTGAGTGGTGGGAAAAGGAAGCGTGGGAATGGGAAGAATTCAAAGTCGACCGGGAAAGTTCCTTCAAAGAAAAAGATGGAAGAGGACGTTTGTTTCATTTGCTTTGATGGTGGTGACCTCGTGCTCTGTGACCGCAGGGGCTGCCCCAAGGCTTACCACCCTTCCTGCATTAATCGCGACGAGGCCTTCTTCCAATCCAAAGGAAAGTGGAATTGTGGTTGGCATCTTTGCAGCAACTGTGAGAAGAATGCACACTACTTGTGCTATACATGTACATTCTCTTTGTGCAAGGGTTGTATCAAAGACGCTGTTATGCTATGTGTTAGGGGAAACAAAGGTTTTTGCGAGACATGCATGAGAACTGTAATGTTGATTGAACAGAATGAGGAGGGAAACAGCATGGCACAAGTTGATTTCGATGACAAAAACAGCTGGGAATATCTCTTCAAGGATTACTATGTAGATCTAAAAAGAAAGCTATCTCTAACATCTGATGAACTCGCTCAAGCTAAAAACCCTTGGAAAGGATCTGGTAAGCTTCCTTCTAAAGAGGAATTGCCAGATGAACTTTTTGATGCCACAAATGATAGAGGATCAGATTCAGATAGCTCTTATGAGAAAGCAGATTTGAGTCGATCTAAAAAAAGGAAGTCCAAGAAACGGGCAAAGTCTCGTTCCAAAGAAAGGAATTCACATAGTGCAGTGGCAACGCATGGTGCTGACGGGCCATCTACAGATGAAAGCTCTGAGTGGGCATCAAAGGAGCTTTTGGAGTTTGTTAGGCATATGAGAAATGGAGATAAATCTTTGTTGTCACAGTTTGATGTGCATGCTCTTTTGCTAGAATATATTAAAATAAATAAGCTTCGAGATCCTCGTCGAAAAAGTCAAATTGTTTGTGATGCGAGGCTTCAAAATTTGTTTGGTAAGCCAAGAGTTGGACATTTCGAAATGTTAAAACTTCTTGAATCCCATTTCCTTCTAAAAGAGGATTCGCAGGCTGAAGATCTCCAGGGGAGTGTTGTTGATACTGAAGTTAGTCATTTGGAGGATGATGGCAATGATGATACATATATTAAATCTGGAAAAGATAAGAAACGTAAAAGTCGTAAAAAGGGTGATGGGAGAGGACTTCAATCTAATGTTGATGATTATGCAGCCATTGATAATCATAATATTAATTTAATTTATCTTAGACGCAATTTAGTGGAAGAACTACTTGAAGATACAGATAAGTTTAATGATAACGTTGTTGGTTCTTTTGTGAGAATAAGAATTTCTGGTAGTGGTCAGAAGCAAGACTTGTATAGGCTGGTTCAGGTTGCAGGTACATGCAAAACAGCAGAGCCATATAAAGTTGGTAAAAAGATGACAGATATCTTGCTAGAAATCTTAAATTTAAACAAGACAGAGATTGTATCAATGGATATCATCTCAAATCAGGAGTTCACAGAGGATGAGTGCAAGCGCCTCCGCCAAAGCATAAAATGCGGCCTCATTAATCGAATGACTGTGGGTGACATTCAGGACAAAGCATTGACACTCCAGGCAGTTAGAGTAAACGATTGGCTAGAAGCAGAGATAGTGCGGCTAAGTCACCTTCGTGATAGAGCCAGTGAGAATGGACGCAGAAAAGAGCTCAGAGAATGTGTAGAGAAATTGCAGCTTTTGAAAACCCCTGAAGAACGGCAACGTAGATTGGAGGAAATTCCAGAAATACATGTGGATCCAAAGATGGATCCAAGTTATGAGTCTGACGAAGGAGATGAAATGGAGGATAAAAGACAAGAAAACTTCATGAGACCTAGAGGGTCAACTGCGTTTGGAAGGAAGGGTAGAGAAATTGCTTCGCCGAGAAGTTGTGGTTCCATTTCAAGCGATTCTTGGAGTGCAACAAGGAATTATTCTCATGGGAATCAGGAACTCAGCAGAAATTTATCTAATAAGGGATTTTCAGTCAAAGGTGATGGTGTTTCTAATGCCAGCGAGGTTTTTAATGATGCTAAATTGCACCAGGGAAGAGATAGGGAATCACAACTATCTAAGAGTTGGGAGAGGCAAAAGCTACCGTCTTCAAGCTTGGACGGTGGTGTTAAAAATATCAAGCCATTGGTAACATCCGAGTCTTTTTCTACTACTGTGTCAGAAGCTGCCACAGCACCATCTTCTGCCGGAATAGCTGCCCCAGCTGTGAAAATTAATGAATCTGAGAAGATCTGGCATTATCAGGATCCATCTGGAAAAGTTCAAGGACCATTTTCCATAACGCAACTTCGCAAATGGAATAATACCGGATACTTCCCTTCTGATTTGAAGATTTGGAAAACCACCGACAGACAAGATGAATCTATACTCTTAACAGATGTCTTAGCAGGGAAGTTTTCAAAGGAACCATCCATGGTAGATAAAACTCCTCCTAAGAATCACAATCATTCATCCTCATTCTCTAGGATGTCTCCTTTGGCCGCTCAAGGTTCAGCAAGTAAAACATCTCCATTGGCAGTTGAGGTCCCTAAGAATCCTGGAAATGGCTGGGGTTCTGATGTTGGTGTCAGAAATGAATCGACAAATCTTCCTTCGCCTACTCCCCAAACTTCTTCAGGTGGGTCTAAGGTTCATGATTTTGAAAATTGGTCACCAACACCTGTCCAAATGGGTGGGTCTGTCTTGGGAAATTCATTCACAAATGGTCTTGGAGGTTTGCAGACCTCCGTAGCAGTAAACTCACAACCTGGTATGACTACAAATACCACTCAGGTACATCTTCATACAACAGAAATGGCACAGGCTCTGGCTGCAGGTGTTGACATTAAAACAACAGCTGCAACTATGCAAAACCAGGCTGGGAGTAGCCATAATTCTCATGCTGAAATACAAGGGTGGGGGCAGTCTGTGGCTCCAAAGCCAGAATCACAGGCCTGGGGAGGTACTCCATCTCAAAGGGTAGAACCAACTAATTCAGCTACCATACCTGCCCAGCAAGCTTCCCATGGTCTATGGGGTGATGCTTCTTCTGTTCAGAACTCTGCCTCATTTAGCAATGGAAATCCAACTGGGAGTTTACCCACACACGGTTTTCCAGGCACGACTGCACCTGAGCCTTGGAGACCACAAGTTTCAGGTAATCAAGCAAACGCCGTGGCCCTGCCACCGCCCAACATACCCTGGGGCGTAAACATGCCAGGAAATCAGAATATTAGCTGGAGTGGGGCAATCCCTGCCAATATGAATGTCAATTGGATGCCTGCACAAGTGCCAGCACCGGGAAATGCAACTCCGGGATGGGCAGCTCCTACCCAGGGGCTACCTCCAGTAAATGCAAATGCAGGTAGCTGGGGAGCACCTGGTCAAGGTCATCAGCAGGTAAATGCAAATGCAGGTTGGGGTGTGCCTGGTCAAGGGCCAGCACCTGGAAGTGCCAATCCTGCTTGGGCTGCATCTGCTGGGAACCCAGGCATGTGGAGAAACGAGCAAAGTCATAATGGAGACAGGTTTTCCAACCAAGGGGAACGTGGTACGCGCAGTGGAGATTCTGGTCGTGGAGGTAAATCTTGGAACAGGCAGTCATCATTTAGAAGCGGAGGCAGAGGGGGTTCTTCTAGGCCTCCCGGTGGGGGACAAAGAGGAATCTGCCGGTATCATGAGAGTGGAAATTGCAGGAAGGGAGCTTCATGTGATTATCAACACAATTAA 4347 0.4463 MAAEEDEASRNQFPPPLQQPSDSPPPDLPINADIHTAGELEAVITDETNDAAVNTEVVAVVDDVAPAEGGEMHAMDMDGIEDEIAVEEEKGDEGTDVDLERENVEEAEANLIIQEEEVQIRNDENTDEAPLVGDEEEEDNDEKEEDEKEEEGDDVEEDEKVEEGEELEEEEGEQDQEQEGEGEEEEEEAEVDGDGGLTEDKEAAEEMEVAEEEEEEQSVSGGKRKRGNGKNSKSTGKVPSKKKMEEDVCFICFDGGDLVLCDRRGCPKAYHPSCINRDEAFFQSKGKWNCGWHLCSNCEKNAHYLCYTCTFSLCKGCIKDAVMLCVRGNKGFCETCMRTVMLIEQNEEGNSMAQVDFDDKNSWEYLFKDYYVDLKRKLSLTSDELAQAKNPWKGSGKLPSKEELPDELFDATNDRGSDSDSSYEKADLSRSKKRKSKKRAKSRSKERNSHSAVATHGADGPSTDESSEWASKELLEFVRHMRNGDKSLLSQFDVHALLLEYIKINKLRDPRRKSQIVCDARLQNLFGKPRVGHFEMLKLLESHFLLKEDSQAEDLQGSVVDTEVSHLEDDGNDDTYIKSGKDKKRKSRKKGDGRGLQSNVDDYAAIDNHNINLIYLRRNLVEELLEDTDKFNDNVVGSFVRIRISGSGQKQDLYRLVQVAGTCKTAEPYKVGKKMTDILLEILNLNKTEIVSMDIISNQEFTEDECKRLRQSIKCGLINRMTVGDIQDKALTLQAVRVNDWLEAEIVRLSHLRDRASENGRRKELRECVEKLQLLKTPEERQRRLEEIPEIHVDPKMDPSYESDEGDEMEDKRQENFMRPRGSTAFGRKGREIASPRSCGSISSDSWSATRNYSHGNQELSRNLSNKGFSVKGDGVSNASEVFNDAKLHQGRDRESQLSKSWERQKLPSSSLDGGVKNIKPLVTSESFSTTVSEAATAPSSAGIAAPAVKINESEKIWHYQDPSGKVQGPFSITQLRKWNNTGYFPSDLKIWKTTDRQDESILLTDVLAGKFSKEPSMVDKTPPKNHNHSSSFSRMSPLAAQGSASKTSPLAVEVPKNPGNGWGSDVGVRNESTNLPSPTPQTSSGGSKVHDFENWSPTPVQMGGSVLGNSFTNGLGGLQTSVAVNSQPGMTTNTTQVHLHTTEMAQALAAGVDIKTTAATMQNQAGSSHNSHAEIQGWGQSVAPKPESQAWGGTPSQRVEPTNSATIPAQQASHGLWGDASSVQNSASFSNGNPTGSLPTHGFPGTTAPEPWRPQVSGNQANAVALPPPNIPWGVNMPGNQNISWSGAIPANMNVNWMPAQVPAPGNATPGWAAPTQGLPPVNANAGSWGAPGQGHQQVNANAGWGVPGQGPAPGSANPAWAASAGNPGMWRNEQSHNGDRFSNQGERGTRSGDSGRGGKSWNRQSSFRSGGRGGSSRPPGGGQRGICRYHESGNCRKGASCDYQHN 1448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05917 1448 CDD PHD5_NSD 248 293 - -
Trre5g05917 1448 Gene3D - 607 735 IPR036128 GO:0003677
Trre5g05917 1448 MobiDBLite consensus disorder prediction 408 467 - -
Trre5g05917 1448 Pfam SWIB/MDM2 domain 471 544 IPR003121 -
Trre5g05917 1448 CDD SWIB-MDM2_like 469 544 - -
Trre5g05917 1448 SUPERFAMILY SWIB/MDM2 domain 468 545 IPR036885 -
Trre5g05917 1448 MobiDBLite consensus disorder prediction 1067 1089 - -
Trre5g05917 1448 MobiDBLite consensus disorder prediction 1182 1262 - -
Trre5g05917 1448 Coils Coil 97 124 - -
Trre5g05917 1448 MobiDBLite consensus disorder prediction 837 853 - -
Trre5g05917 1448 ProSiteProfiles Zinc finger PHD-type profile. 246 312 IPR019787 -
Trre5g05917 1448 ProSiteProfiles GYF domain profile. 955 1009 IPR003169 GO:0005515
Trre5g05917 1448 Pfam GYF domain 958 1000 IPR003169 GO:0005515
Trre5g05917 1448 MobiDBLite consensus disorder prediction 431 445 - -
Trre5g05917 1448 Pfam Plus-3 domain 610 713 IPR004343 GO:0003677
Trre5g05917 1448 MobiDBLite consensus disorder prediction 408 430 - -
Trre5g05917 1448 ProSiteProfiles Zinc finger C3H1-type profile. 1423 1448 IPR000571 GO:0046872
Trre5g05917 1448 MobiDBLite consensus disorder prediction 1191 1243 - -
Trre5g05917 1448 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 153 1448 - -
Trre5g05917 1448 Gene3D - 957 1015 IPR035445 -
Trre5g05917 1448 Gene3D SWIB/MDM2 domain 458 554 IPR036885 -
Trre5g05917 1448 MobiDBLite consensus disorder prediction 886 913 - -
Trre5g05917 1448 MobiDBLite consensus disorder prediction 1015 1089 - -
Trre5g05917 1448 MobiDBLite consensus disorder prediction 794 813 - -
Trre5g05917 1448 ProSiteProfiles SWIB/MDM2 domain profile. 463 546 IPR003121 -
Trre5g05917 1448 MobiDBLite consensus disorder prediction 1023 1051 - -
Trre5g05917 1448 MobiDBLite consensus disorder prediction 129 195 - -
Trre5g05917 1448 MobiDBLite consensus disorder prediction 886 901 - -
Trre5g05917 1448 SMART swib_2 488 549 IPR019835 -
Trre5g05917 1448 ProSiteProfiles Plus3 domain profile. 605 738 IPR004343 GO:0003677
Trre5g05917 1448 SUPERFAMILY FYVE/PHD zinc finger 238 293 IPR011011 -
Trre5g05917 1448 Coils Coil 197 217 - -
Trre5g05917 1448 SMART gyf_5 956 1011 IPR003169 GO:0005515
Trre5g05917 1448 MobiDBLite consensus disorder prediction 1370 1414 - -
Trre5g05917 1448 MobiDBLite consensus disorder prediction 566 595 - -
Trre5g05917 1448 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 235 340 IPR013083 -
Trre5g05917 1448 MobiDBLite consensus disorder prediction 1307 1448 - -
Trre5g05917 1448 MobiDBLite consensus disorder prediction 820 853 - -
Trre5g05917 1448 SUPERFAMILY GYF domain 947 1008 IPR035445 -
Trre5g05917 1448 ProSitePatterns Zinc finger PHD-type signature. 249 309 IPR019786 -
Trre5g05917 1448 MobiDBLite consensus disorder prediction 1 32 - -
Trre5g05917 1448 MobiDBLite consensus disorder prediction 566 581 - -
Trre5g05917 1448 SMART PHD_3 248 294 IPR001965 -
Trre5g05917 1448 SMART rtf1 605 715 IPR004343 GO:0003677
Trre5g05917 1448 MobiDBLite consensus disorder prediction 1331 1345 - -
Trre5g05917 1448 FunFam Zinc finger CCCH domain-containing protein 19 238 338 - -
Trre5g05917 1448 SUPERFAMILY Plus3-like 606 734 IPR036128 GO:0003677
Trre5g05917 1448 FunFam Zinc finger CCCH domain-containing protein 19 456 551 - -
Trre5g05917 1448 MobiDBLite consensus disorder prediction 109 239 - -
Trre5g05917 1448 FunFam Zinc finger CCCH domain-containing protein 19 606 735 - -
Trre5g05917 1448 CDD GYF 955 1010 IPR003169 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05917 Trre-Chr5 58690301 58702478 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05917 246 333 PHD Transcription Factor Family AT5G36670 35.000 2.49e-07 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Trre5g05917 Plus-3 7e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05917 - - aprc:113865790 1914.43