Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05906 ATGGAGTTTGCCGTTGCAAAAGCTTTGAAACCGAGTTTAAGGAGGGAGTTTGTTTTTCAACAAACACTAGGCGAGGAACTTTTCAGTTTCAACGCTAACACGGTGGTTGCCGGTGAAGATTTCTCCGTTGACGACCTTCTTGACTTTTCAAACGGTGACGTTATTCACCATGAAAACAACAACGAAGAAGAAGAAGAGGAAAAAGATAACTCATCTCTTTCTTCTCACTCTCTCTCAGAAGATAACAACTCCTCCAATTCCACCGACGCTTCCTATGATTCCATTTTCTCAACTGAATTACTCGTTCCGGATGATGACGTGGCAGGTTTGGAATGGGTTTCTCACTTCGTAGATGATTCTCTACCGGAACTATCTCTTCTGTACCCGGTTCAAATTCAAACCAACGCGTTTCCTCAAAATCAAACCAACCATGGAAAAACTCTTCGTTTTTCGTCTGAGAAAATCAAAATTACCAAAAAGACCAGAACCATGAAGAACAGAAAACCAAACCCTCGCGTTTGGGCTCTTAGCCCTTTGCTTTCGCGTCCGTTTTTCCCGTCACCGCCGCCTTTGGTTTCCGGTGAGCCGCCAGCGAAGAAACAGAAGAAAAAGCCCGAGGCCCAAGTTACTGGTGCTGAGGCCCAACATGAGGCCCATTTACAGCGACGGTGTAGTCATTGCCAGGTTCAGAAGACCCCGCAGTGGAGAACCGGTCCGTTAGGAGCTAAAACCCTATGTAACGCGTGTGGGGTTCGGTATAAGTCCGGTCGGCTTTTTTCGGAGTATAGACCGGCTTGTAGCCCAACCTTCAGCAGTGAAATTCATTCCAATAGTCACCGGAAAGTGTTGGAGATGAGGAAAAGGAAAGGGATGGTTGGACCGGAACCCGGTTTACCGACTCAGACCCAAATGGTTACGACTTGTTGA 927 0.4682 MEFAVAKALKPSLRREFVFQQTLGEELFSFNANTVVAGEDFSVDDLLDFSNGDVIHHENNNEEEEEEKDNSSLSSHSLSEDNNSSNSTDASYDSIFSTELLVPDDDVAGLEWVSHFVDDSLPELSLLYPVQIQTNAFPQNQTNHGKTLRFSSEKIKITKKTRTMKNRKPNPRVWALSPLLSRPFFPSPPPLVSGEPPAKKQKKKPEAQVTGAEAQHEAHLQRRCSHCQVQKTPQWRTGPLGAKTLCNACGVRYKSGRLFSEYRPACSPTFSSEIHSNSHRKVLEMRKRKGMVGPEPGLPTQTQMVTTC 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05906 308 MobiDBLite consensus disorder prediction 75 90 - -
Trre5g05906 308 FunFam GATA transcription factor 214 298 - -
Trre5g05906 308 Gene3D - 214 290 IPR013088 GO:0006355|GO:0008270
Trre5g05906 308 Pfam GATA zinc finger 224 257 IPR000679 GO:0006355|GO:0043565
Trre5g05906 308 PIRSF Txn_fac_GATA_plant 20 307 IPR016679 GO:0003677|GO:0005634|GO:0045893
Trre5g05906 308 PANTHER GATA TRANSCRIPTION FACTOR 33 291 - -
Trre5g05906 308 SMART GATA_3 218 272 IPR000679 GO:0006355|GO:0043565
Trre5g05906 308 MobiDBLite consensus disorder prediction 57 90 - -
Trre5g05906 308 MobiDBLite consensus disorder prediction 197 219 - -
Trre5g05906 308 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 215 280 - -
Trre5g05906 308 MobiDBLite consensus disorder prediction 186 219 - -
Trre5g05906 308 ProSiteProfiles GATA-type zinc finger domain profile. 218 254 IPR000679 GO:0006355|GO:0043565
Trre5g05906 308 ProSitePatterns GATA-type zinc finger domain. 224 249 IPR000679 GO:0006355|GO:0043565
Trre5g05906 308 CDD ZnF_GATA 223 280 IPR000679 GO:0006355|GO:0043565
Trre5g05906 308 MobiDBLite consensus disorder prediction 57 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05906 Trre-Chr5 58648303 58649299 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05906 40 289 C2C2-Gata Transcription Factor Family AT4G36240 42.231 1.24e-55 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Trre5g05906 GATA 9.8e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05906 - - gmx:100780311 330.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05906 5 58648303 58649299 Trre5g05906 5 58648303 58649299 ECH
Trre5g05906 5 58648303 58649299 Trre7g02713 7 23295126 23296113 ECH