Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05902 ATGAAGATCCAATGTGATGTTTGTGAGAAAGCTGAGGCTTCCATGTTCTGTCCTTCAGATGAAGCTGCTCTTTGTAATGGATGTGATCATACTATTCACCATGCCAATAAGCTTGCAACCAAACATGCTCGTTTCTCTCTTGTCCACCTCAACTCCAAAGACTACCCTCTTTGTGATATCTGCCAAGAGAGGCGTGGATATCTATTTTGTCAAGAAGACCGGGCGATTTTATGCAGAGAATGTGACATTCCAATCCATAAAGAAAATGAACATACACAGAAACATAATAGGTTTCTTCTATCTGGTGTGAAGCTTTCAAACAATTCTTTGGACACAGATTCATCATCTACCAGTATTGGCTCTGAAACAAGAAACTACTCTAGTAGATCAAAAGCTAACATAATACCAAGATCAGTTTCCAATGAAAATGTCAGTTCTTCTTGCAAGATTGAAGATAACATGGCTAGTGATACTGGTTCTGTTTCAACAAGCAGCATTTCTGAATACTTGATTGAAACCATACCCGGTTACTGCTTCGAAGATTTTCTTAATGCTTCATTCCCTCCTAATGGTTTCTGTAAGAATAATTATTCGGCATTTCAGTACCAAGATGTTCAAGCTAGCAAGTTTTTGTTTCCTCTAGCACAGGTTCAATCAGCTCAACTAACTATTCCAACTCCTTCTAATATTGGTTCAGTGGTTGGAGTTAAAGAAATTCCAAAAGTGAACACTTTCAAAGGGAACTCAAAATGGAAGAAAGATTATGGATGTACAGTTCCAGTAAATGGTGCTACATTCATTAAAAAATCTAAATATTCTAGATAA 825 0.3709 MKIQCDVCEKAEASMFCPSDEAALCNGCDHTIHHANKLATKHARFSLVHLNSKDYPLCDICQERRGYLFCQEDRAILCRECDIPIHKENEHTQKHNRFLLSGVKLSNNSLDTDSSSTSIGSETRNYSSRSKANIIPRSVSNENVSSSCKIEDNMASDTGSVSTSSISEYLIETIPGYCFEDFLNASFPPNGFCKNNYSAFQYQDVQASKFLFPLAQVQSAQLTIPTPSNIGSVVGVKEIPKVNTFKGNSKWKKDYGCTVPVNGATFIKKSKYSR 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05902 274 FunFam B-box zinc finger protein 21 1 98 - -
Trre5g05902 274 CDD Bbox1_BBX-like 5 47 - -
Trre5g05902 274 Gene3D Classic Zinc Finger 1 98 - -
Trre5g05902 274 Pfam B-box zinc finger 54 92 IPR000315 GO:0008270
Trre5g05902 274 CDD Bbox1_BBX-like 57 100 - -
Trre5g05902 274 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Trre5g05902 274 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 225 - -
Trre5g05902 274 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Trre5g05902 274 SMART bboxneu5 53 100 IPR000315 GO:0008270
Trre5g05902 274 SMART bboxneu5 4 47 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05902 Trre-Chr5 58606476 58607829 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05902 1 194 C2C2-CO-like Transcription Factor Family AT1G75540 50.971 4.07e-61 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre5g05902 zf-B_box 1.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05902 - - tpra:123898275 511.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05902 5 58606476 58607829 Trre5g05902 5 58606476 58607829 ECH
Trre5g05902 5 58606476 58607829 Trre9g01160 9 9349905 9352210 ECH
Trre1g00138 1 1050892 1052185 Trre5g05902 5 58606476 58607829 PCT