Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05899 ATGGCTAAACCAAAACCTCCAAAGCGAACCCTAGAGTCATACCCAGTCAAACACATGAACAAAAATATCAAAGCTGGTGATTGTGTTCTGATGCGTCCAGCTGAACCATCAAAACCCTCGTATGTGGCTAGGATCGAGGGGATCGAAGCTGATGGACGAGGTTCTAACGTGAAAATTCATGTTCGTTGGTATTATCGGCCGGAGGAGTCGATCGGTGGCCGGCGACAGTTTCATGGCTCGAAGGAAGTTTTTCTGTCTGATCATTTTGATGTTCAGAGTGCTGACACAATTGAAGCCAAGTGTACTGTTCACAGTTTCAAGAGCTACACGAAGCTTGATGCTGTTGGTAATGAAGATTTCTTCTGTCGTTTTGAGTACAATTCTGCCACCGGTGCTTTCAATCCTGATAGAGTTGCTGTGTATTGTAAATGTGAGATGCCGTACAATCCGGACGATCTTATGGTCCAGTGTGAGGGATGCAGTGACTGGTTTCATCCTGCTTGTATAGACATGACTGTGGAGGAAGCCGAGAGACTTGACCACTTCTTTTGTGAAAGTTGTTCTGCCGAAGGTCAATCCAAGTTGCCAAATCCTCATTCTGCTATAAGACACTCAGATACCAAGGTGGATACTAAACGCCGTCGAAGGTAA 651 0.4547 MAKPKPPKRTLESYPVKHMNKNIKAGDCVLMRPAEPSKPSYVARIEGIEADGRGSNVKIHVRWYYRPEESIGGRRQFHGSKEVFLSDHFDVQSADTIEAKCTVHSFKSYTKLDAVGNEDFFCRFEYNSATGAFNPDRVAVYCKCEMPYNPDDLMVQCEGCSDWFHPACIDMTVEEAERLDHFFCESCSAEGQSKLPNPHSAIRHSDTKVDTKRRRR 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05899 216 PANTHER OS08G0421900 PROTEIN 5 208 - -
Trre5g05899 216 SMART BAH_4 21 137 IPR001025 GO:0003682
Trre5g05899 216 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 205 IPR013083 -
Trre5g05899 216 Pfam PHD-finger 141 189 IPR019787 -
Trre5g05899 216 ProSiteProfiles Zinc finger PHD-type profile. 139 190 IPR019787 -
Trre5g05899 216 ProSitePatterns Zinc finger PHD-type signature. 142 187 IPR019786 -
Trre5g05899 216 Gene3D - 2 133 IPR043151 -
Trre5g05899 216 MobiDBLite consensus disorder prediction 191 216 - -
Trre5g05899 216 SUPERFAMILY FYVE/PHD zinc finger 131 191 IPR011011 -
Trre5g05899 216 ProSiteProfiles BAH domain profile. 21 137 IPR001025 GO:0003682
Trre5g05899 216 Pfam BAH domain 23 136 IPR001025 GO:0003682
Trre5g05899 216 SMART PHD_3 141 188 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05899 Trre-Chr5 58567702 58571660 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05899 31 139 Core DNA Replication Machinery Family AT4G14700 29.358 2.68e-09 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Trre5g05899 BAH 7.6e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05899 K25868 - gmx:100787968 423.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05899 5 58567702 58571660 Trre5g05899 5 58567702 58571660 ECH