Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05891 ATGGCTTCATCAAGTGGTACATCTTCAGGCTATTCAACACTACCAAACTCAGGTTCAGAGGAGGATTTAATGCTTCTAATGGATCAAAGAAAAAGAAAGAGAATGATATCAAACCGCGAATCGGCGAGAAGATCTCGATTAAGGAAACAAAAACACTTAGATGATCTTGCTGTTCAAGTGAGTCAGCTCAGAAATGAGAATCAACAGATTCTAACTTCTGTTAACCTCACAACACAAAGATTCTTGGCTGTTGAATCTGAAAACTCTGTTCTTAGAGCTCAACTTACTGAACTCAACAACAGATTTGAATCATTGAATGAAATCATCAACTTCATGAATGTTACAAATGGTGTTTTTGAACCTGTTGTTGATAACAATAATAACAATTACTTCAATAACCCTTTGAATATGAGTTATTTGAATCAACCAATCATGGCTTCTGCAGACATGAACATGGTGCATTATTGA 468 0.3547 MASSSGTSSGYSTLPNSGSEEDLMLLMDQRKRKRMISNRESARRSRLRKQKHLDDLAVQVSQLRNENQQILTSVNLTTQRFLAVESENSVLRAQLTELNNRFESLNEIINFMNVTNGVFEPVVDNNNNNYFNNPLNMSYLNQPIMASADMNMVHY 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05891 155 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 33 48 IPR004827 GO:0003700|GO:0006355
Trre5g05891 155 FunFam BZIP transcription factor 28 79 - -
Trre5g05891 155 SUPERFAMILY Leucine zipper domain 30 81 IPR046347 GO:0003700|GO:0006355
Trre5g05891 155 Coils Coil 53 73 - -
Trre5g05891 155 Pfam bZIP transcription factor 30 72 IPR004827 GO:0003700|GO:0006355
Trre5g05891 155 Coils Coil 88 108 - -
Trre5g05891 155 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 28 91 IPR004827 GO:0003700|GO:0006355
Trre5g05891 155 MobiDBLite consensus disorder prediction 1 19 - -
Trre5g05891 155 MobiDBLite consensus disorder prediction 1 21 - -
Trre5g05891 155 SMART brlzneu 26 90 IPR004827 GO:0003700|GO:0006355
Trre5g05891 155 PANTHER BZIP TRANSCRIPTION FACTOR 44 3 151 - -
Trre5g05891 155 CDD bZIP_plant_GBF1 31 81 IPR045314 GO:0003700|GO:0006355
Trre5g05891 155 Gene3D - 28 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05891 Trre-Chr5 58495082 58495549 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05891 26 149 bZIP Transcription Factor Family AT4G34590 57.895 4.38e-46 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Trre5g05891 bZIP_1 3.6e-11 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05891 K25786 - pop:7470005 201.445