Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05890 ATGGGATTTTGTAGAAAAATAATAGTATGCTTGTTGATGATCATCATCACAATAGGGTGTAATGAGACTGTTGGTAGAGATCCTGTGCTGCATAGGGTTGGAGGTGGAAAGTATACTTGGAAACCAAAAATTAACTTCACACAATGGGCAAGTAATGAGACTTTCTACAAGGATGATTGGCTATATTTTGGTTTTGATAAGCACATTTACAATGTTCTTGAGGTGAACAAAACAAATTATGAGAAATGTATTGACACTGGAAACATAAACAACATCACTAGAGGAGGAAGAGATGTTTTCCAACTTTCAGAAGAGAGGACATATTACTTTATATGTGGCAGAGGCTTTTGCTTTCAAGGAATGAAGGTTGAAATAAATGTTGAACCACTTGAATTACCACTACTACCTCCTCCAACAGTTCCGAATAAGGCCTGCTCATCGAGAAAAATGAATTACACTAAATTCGTTATGCTTTTCGTCATTGCTTTGGCATGGACCCTCGTGTAG 507 0.3708 MGFCRKIIVCLLMIIITIGCNETVGRDPVLHRVGGGKYTWKPKINFTQWASNETFYKDDWLYFGFDKHIYNVLEVNKTNYEKCIDTGNINNITRGGRDVFQLSEERTYYFICGRGFCFQGMKVEINVEPLELPLLPPPTVPNKACSSRKMNYTKFVMLFVIALAWTLV 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05890 168 SUPERFAMILY Cupredoxins 31 127 IPR008972 -
Trre5g05890 168 FunFam Lamin-like protein 28 130 - -
Trre5g05890 168 Gene3D - 29 131 IPR008972 -
Trre5g05890 168 Pfam Plastocyanin-like domain 40 121 IPR003245 GO:0009055
Trre5g05890 168 ProSiteProfiles Phytocyanin domain profile. 29 129 IPR003245 GO:0009055
Trre5g05890 168 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 20 - -
Trre5g05890 168 PANTHER BLUE COPPER PROTEIN 31 141 IPR039391 GO:0009055
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05890 Trre-Chr5 58493041 58493658 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05890 7 147 Phytocyanin Superfamily AT2G27035 48.936 8.36e-49 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05890 - - gmx:100789719 222.246