Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05877 ATGGCTCCAAAGAAGGACAAGGCTCCACCACCTTCCTCAAAGCCCGCCAAATCCGGTGGTGGCAAGCAGAAGAAGAAGAAGTGGAGCAAGGGTAAGCAAAAGGAGAAGGTTAATAACATGGTGTTGTTTGATCAAGCTACTTATGATAAACTTCTCTCTGAGGCTCCCAAATATAAGCTCATTACTCCTTCTGTTCTCTCTGATCGTTTGAGGATTAACGGATCACTTGCAAGGAGAGCTATAAGAGATCTGATGGCTAGAGGTTTAATCAGGATGGTATCTTCCCATGCAAGTCAACAGATTTACACCAGAGCTACAAACACCTAA 327 0.4404 MAPKKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNNMVLFDQATYDKLLSEAPKYKLITPSVLSDRLRINGSLARRAIRDLMARGLIRMVSSHASQQIYTRATNT 108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05877 108 Gene3D - 21 108 - -
Trre5g05877 108 PANTHER 40S RIBOSOMAL PROTEIN S25 1 108 IPR004977 -
Trre5g05877 108 Pfam S25 ribosomal protein 7 105 IPR004977 -
Trre5g05877 108 MobiDBLite consensus disorder prediction 1 36 - -
Trre5g05877 108 FunFam 40S ribosomal protein S25 21 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05877 Trre-Chr5 58423217 58425038 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05877 1 107 Cytoplasmic Ribosomal Protein Gene Family AT4G34555 91.589 8.44e-55 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05877 K02975 - nnu:104587171 158.688