Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05871 ATGGAGGGAACTTCATCATCCTCTACAACAAATGATTATTATGTTAAAGAAATATTTCCAATATCTGATGATGAGAAATATGCAGAGGAAATACAATTACAAGAAGCATTAATTTTCTCTGCTATTTCAAATACTAACAAAGAAATCCAAGTTGTTGATGTTGATGAAATTGATAATGTCAATAACACCCTTTTGAGAGAACTCAAACTAAAAGAGAAAGAGACTTTTGAAGGTCAATCTTCTTCTTCTTCTTCATCTCAATTGAAACAATATTCCTATTCTGGCATCTGCATGGAAGCTAAATCTATTGAAGAAATGTTCGAAAACCGAAACTGTTGTTCACACTCATTTTGTGAAGAATGTGTTGGAAAATATCTAGTTGCAAAAATTGAAGAGAATATATCAATGATAAAATGTCCTGATCCAAAATGCAATGGTATTTTAGAGCTACATAATTGTATTTCAATTATACCAAAAGATGTGTTTGATAGATGGGGAAATGCAATTTGTGAGAATATGGTGATAGGTTCACAAAAATTTTACTGTCCTTTCAATGACTGTTCAGCTATGTTAGTGAATGATGAAAAAGAAGTTGTGACTGTTGCGGAATGTCCACATTGTCATAGATTATTCTGTGCAGAATGTAAGGTTTCATGGCATGTAGGTGTTGATTGTAAAGAGTTTCAAAGCTTGAAAGATGGTGAGAGAGGGAGGGAAGATTTAATGGCCATGGAACTTGCTAAGAACAAGAAATGGAAAAGATGTCCAAAATGTAGTTTCTATGTGGAAAAAAGTCAGGGATGTACTCGTATTTCATGCAGATGTGGTAATCAATTTTGCTATGGCTGTGGATCCACATGGAACAATGACTCCCATTATTCATGTGCAAAACAAAACTCATGA 903 0.3355 MEGTSSSSTTNDYYVKEIFPISDDEKYAEEIQLQEALIFSAISNTNKEIQVVDVDEIDNVNNTLLRELKLKEKETFEGQSSSSSSSQLKQYSYSGICMEAKSIEEMFENRNCCSHSFCEECVGKYLVAKIEENISMIKCPDPKCNGILELHNCISIIPKDVFDRWGNAICENMVIGSQKFYCPFNDCSAMLVNDEKEVVTVAECPHCHRLFCAECKVSWHVGVDCKEFQSLKDGERGREDLMAMELAKNKKWKRCPKCSFYVEKSQGCTRISCRCGNQFCYGCGSTWNNDSHYSCAKQNS 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05871 300 Gene3D - 222 300 - -
Trre5g05871 300 Pfam IBR domain, a half RING-finger domain 177 225 IPR002867 GO:0008270
Trre5g05871 300 Pfam IBR domain, a half RING-finger domain 245 290 IPR002867 GO:0008270
Trre5g05871 300 FunFam RBR-type E3 ubiquitin transferase 89 176 - -
Trre5g05871 300 ProSitePatterns Zinc finger RING-type signature. 113 122 IPR017907 -
Trre5g05871 300 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 63 295 IPR031127 GO:0004842|GO:0016567
Trre5g05871 300 SUPERFAMILY RING/U-box 236 295 - -
Trre5g05871 300 CDD Rcat_RBR_unk 251 287 - -
Trre5g05871 300 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 90 178 IPR013083 -
Trre5g05871 300 CDD BRcat_RBR_unk 176 228 - -
Trre5g05871 300 SUPERFAMILY RING/U-box 95 172 - -
Trre5g05871 300 ProSiteProfiles TRIAD supradomain profile. 90 300 IPR044066 -
Trre5g05871 300 SMART ibrneu5 235 295 IPR002867 GO:0008270
Trre5g05871 300 SMART ibrneu5 163 225 IPR002867 GO:0008270
Trre5g05871 300 SUPERFAMILY RING/U-box 173 229 - -
Trre5g05871 300 Coils Coil 54 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05871 Trre-Chr5 58383172 58384649 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05871 95 295 C3H Transcription Factor Family AT2G31760 28.436 3.37e-16 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05871 K11975 - gmx:100815626 363.229