Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre5g05871 | ATGGAGGGAACTTCATCATCCTCTACAACAAATGATTATTATGTTAAAGAAATATTTCCAATATCTGATGATGAGAAATATGCAGAGGAAATACAATTACAAGAAGCATTAATTTTCTCTGCTATTTCAAATACTAACAAAGAAATCCAAGTTGTTGATGTTGATGAAATTGATAATGTCAATAACACCCTTTTGAGAGAACTCAAACTAAAAGAGAAAGAGACTTTTGAAGGTCAATCTTCTTCTTCTTCTTCATCTCAATTGAAACAATATTCCTATTCTGGCATCTGCATGGAAGCTAAATCTATTGAAGAAATGTTCGAAAACCGAAACTGTTGTTCACACTCATTTTGTGAAGAATGTGTTGGAAAATATCTAGTTGCAAAAATTGAAGAGAATATATCAATGATAAAATGTCCTGATCCAAAATGCAATGGTATTTTAGAGCTACATAATTGTATTTCAATTATACCAAAAGATGTGTTTGATAGATGGGGAAATGCAATTTGTGAGAATATGGTGATAGGTTCACAAAAATTTTACTGTCCTTTCAATGACTGTTCAGCTATGTTAGTGAATGATGAAAAAGAAGTTGTGACTGTTGCGGAATGTCCACATTGTCATAGATTATTCTGTGCAGAATGTAAGGTTTCATGGCATGTAGGTGTTGATTGTAAAGAGTTTCAAAGCTTGAAAGATGGTGAGAGAGGGAGGGAAGATTTAATGGCCATGGAACTTGCTAAGAACAAGAAATGGAAAAGATGTCCAAAATGTAGTTTCTATGTGGAAAAAAGTCAGGGATGTACTCGTATTTCATGCAGATGTGGTAATCAATTTTGCTATGGCTGTGGATCCACATGGAACAATGACTCCCATTATTCATGTGCAAAACAAAACTCATGA | 903 | 0.3355 | MEGTSSSSTTNDYYVKEIFPISDDEKYAEEIQLQEALIFSAISNTNKEIQVVDVDEIDNVNNTLLRELKLKEKETFEGQSSSSSSSQLKQYSYSGICMEAKSIEEMFENRNCCSHSFCEECVGKYLVAKIEENISMIKCPDPKCNGILELHNCISIIPKDVFDRWGNAICENMVIGSQKFYCPFNDCSAMLVNDEKEVVTVAECPHCHRLFCAECKVSWHVGVDCKEFQSLKDGERGREDLMAMELAKNKKWKRCPKCSFYVEKSQGCTRISCRCGNQFCYGCGSTWNNDSHYSCAKQNS | 300 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre5g05871 | 300 | Gene3D | - | 222 | 300 | - | - | |
Trre5g05871 | 300 | Pfam | IBR domain, a half RING-finger domain | 177 | 225 | IPR002867 | GO:0008270 | |
Trre5g05871 | 300 | Pfam | IBR domain, a half RING-finger domain | 245 | 290 | IPR002867 | GO:0008270 | |
Trre5g05871 | 300 | FunFam | RBR-type E3 ubiquitin transferase | 89 | 176 | - | - | |
Trre5g05871 | 300 | ProSitePatterns | Zinc finger RING-type signature. | 113 | 122 | IPR017907 | - | |
Trre5g05871 | 300 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 63 | 295 | IPR031127 | GO:0004842|GO:0016567 | |
Trre5g05871 | 300 | SUPERFAMILY | RING/U-box | 236 | 295 | - | - | |
Trre5g05871 | 300 | CDD | Rcat_RBR_unk | 251 | 287 | - | - | |
Trre5g05871 | 300 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 90 | 178 | IPR013083 | - | |
Trre5g05871 | 300 | CDD | BRcat_RBR_unk | 176 | 228 | - | - | |
Trre5g05871 | 300 | SUPERFAMILY | RING/U-box | 95 | 172 | - | - | |
Trre5g05871 | 300 | ProSiteProfiles | TRIAD supradomain profile. | 90 | 300 | IPR044066 | - | |
Trre5g05871 | 300 | SMART | ibrneu5 | 235 | 295 | IPR002867 | GO:0008270 | |
Trre5g05871 | 300 | SMART | ibrneu5 | 163 | 225 | IPR002867 | GO:0008270 | |
Trre5g05871 | 300 | SUPERFAMILY | RING/U-box | 173 | 229 | - | - | |
Trre5g05871 | 300 | Coils | Coil | 54 | 74 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre5g05871 | Trre-Chr5 | 58383172 | 58384649 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre5g05871 | 95 | 295 | C3H Transcription Factor Family | AT2G31760 | 28.436 | 3.37e-16 | 77.0 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre5g05871 | K11975 | - | gmx:100815626 | 363.229 |