Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05866 ATGTTGCACTGTTTGAATACTAATTCTGAGAGTTGCTCCTCCGACATAACTGTTTTGGAAAGACAAAGAGAAAGAATGAATTGGCAACAACAACATGAGCAACAAAATGAACAAAGTTACTTTTCTGGAAATGGATTCAATGATACTACTATGTTCTGTTCTTCTCTGCAACAAGATTCTTCTTCACTTCCTCATTTTCTGCCTCTTCAAATCCCAACCGTTGATGTTACTTCTTCTTCATCAATTTCAAGAACTTTCAGCTGTCCACCTCTTCTTCCAGACCCCAAACTCATTCATTCTTCTTCAATTGGAAAACACAATTCTTCTAAAAAGAGAAAATCTGATAAGCTCAAGGTTGTTGGTGAAATTGATAACAAAGACAAGAGGATCAAAATTGGTGGTGCTGAGGATGGTGAATCTAAGATCACAGGGAACCACAGTGCCAAAAAGAGCAACAGTAATAATAACAAAGAAAACTGTGGAGCAGCAGAAGATACTTCAAACTCAAAGGAAAATTCTAAAGTTTCTGAGGTTCAAAATCAAAAGACTGATTACATTCATGTTCGAGCGCGTCGCGGCCAAGCCACTGATAGCCACAGCTTAGCTGAAAGAGTGAGAAGGGAAAAGATTAGTGAGAGAATGAAGTATTTACAAGATTTAGTACCAGGATGTAACAAAATTACAGGAAAAGCTGGAATGCTTGATGAAATAATCAATTATGTTCAGTCTCTTCAAAAACAAGTTGAGTTCTTATCAATGAAATTAGCTACAGTTAATCCAAGTCTTGACTTACATATTGATGATCTATTTGAAAAAGAGGTGTTTCCTACTTGTGGTGCAAATGCAAATTTTCCAGCAATTGGAATATCATCAGAATTGAATAATAACAATCCTTATCTTCAATTCAATCCACCACAACAATTTGTACCTTATGGTGGATTAGATACTGGAATCAACCCTACAGATATAGGACTTAGAAGGAGTATAAGTGCCCCTATATCAATACCTGAAACTTTTATTGATTCTTCTTGTTTCTCTCAAATTTTACCTTCTACAACATGGGAAGGTGATTTCCAAAATCTTTACAACATGAATTTTGATCAAGCAAGAGCAACATCTTTTCCTTCTCAATCTCAGCTATTTACAGGTCTAGTTGAAGCTGGCAATCTAAAGATCGAGATGTAA 1185 0.3578 MLHCLNTNSESCSSDITVLERQRERMNWQQQHEQQNEQSYFSGNGFNDTTMFCSSLQQDSSSLPHFLPLQIPTVDVTSSSSISRTFSCPPLLPDPKLIHSSSIGKHNSSKKRKSDKLKVVGEIDNKDKRIKIGGAEDGESKITGNHSAKKSNSNNNKENCGAAEDTSNSKENSKVSEVQNQKTDYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQKQVEFLSMKLATVNPSLDLHIDDLFEKEVFPTCGANANFPAIGISSELNNNNPYLQFNPPQQFVPYGGLDTGINPTDIGLRRSISAPISIPETFIDSSCFSQILPSTTWEGDFQNLYNMNFDQARATSFPSQSQLFTGLVEAGNLKIEM 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05866 394 SMART finulus 200 250 IPR011598 GO:0046983
Trre5g05866 394 Gene3D - 191 264 IPR036638 GO:0046983
Trre5g05866 394 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 62 290 IPR024097 GO:0006355
Trre5g05866 394 Pfam Helix-loop-helix DNA-binding domain 198 245 IPR011598 GO:0046983
Trre5g05866 394 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 192 261 IPR036638 GO:0046983
Trre5g05866 394 FunFam Basic helix-loop-helix transcription factor 191 263 - -
Trre5g05866 394 CDD bHLH_AtBPE_like 184 269 - -
Trre5g05866 394 MobiDBLite consensus disorder prediction 114 136 - -
Trre5g05866 394 MobiDBLite consensus disorder prediction 145 181 - -
Trre5g05866 394 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 194 244 IPR011598 GO:0046983
Trre5g05866 394 MobiDBLite consensus disorder prediction 95 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05866 Trre-Chr5 58350987 58353716 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05866 15 362 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 38.420 1.33e-57 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre5g05866 HLH 2.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05866 - - tpra:123899220 639.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05866 5 58350987 58353716 Trre5g05866 5 58350987 58353716 ECH
Trre5g05866 5 58350987 58353716 Trre9g01011 9 7978873 7981736 ECH