Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05865 ATGGCCTCAACTTCAATTAGCAAACACAAGCCTTGTGATTCAATTTGGACACCAAAACAGAATAAGTTGTTTGAAAAAGCACTTGCAAAATATGACAAGGATACCCCTGACCGTTGGCAAAATGTAGCAAAAGCAGTTGGTGGTAAATCAGTTGAGGAAGTTAAGAGACACTATGAGTTACTTTTAGAGGATCTCAAACACATTGAATCTGGTCATGTTCCAATTCCAAACTACAAAGTCTAG 243 0.3786 MASTSISKHKPCDSIWTPKQNKLFEKALAKYDKDTPDRWQNVAKAVGGKSVEEVKRHYELLLEDLKHIESGHVPIPNYKV 80
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05865 80 ProSiteProfiles SANT domain profile. 11 66 IPR017884 -
Trre5g05865 80 SUPERFAMILY Homeodomain-like 14 70 IPR009057 -
Trre5g05865 80 CDD SANT 16 62 IPR001005 -
Trre5g05865 80 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 1 79 IPR044636 GO:0003700
Trre5g05865 80 Gene3D - 12 75 - -
Trre5g05865 80 ProSiteProfiles Myb-like domain profile. 16 62 IPR001005 -
Trre5g05865 80 Pfam Myb-like DNA-binding domain 16 59 IPR001005 -
Trre5g05865 80 SMART sant 12 64 IPR001005 -
Trre5g05865 80 FunFam Transcription factor SRM1 8 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05865 Trre-Chr5 58341265 58341507 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre5g05865 Myb_DNA-binding 4.1e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05865 - - aprc:113865826 146.362