Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05864 ATGGCAGAAGCTGAATACCGATGCTTTGTTGGTGGACTTGCCTGGGCCACCGACAACGAGGCTCTTGAGAAAGCCTTTTCACACTTTGGCGAAATCGTCGAATCGAAGGTTATCACCGATCGTGATACTGGAAGATCGAGAGGATTTGGATTTGTCACGTTCTCGTCCGAGCAATCCTTGAAAGACGCGATCGAAGGGATGAACGGCCAGGATCTTGATGGACGCAACATCACTGTGAACGAGGCTCAAAGTCGCGGCAGTGGAGGCGGTGGTGGAGGAGGTGGATTCCGTAGTGGAGGTGGTGGTGGAGGATATAGTAGTGGTGGTGGAGGTTATAGCCGTGGTGGAGGTGGAAGAGGTTATGGAAGTGGTGACCGTCGTGATGGTGGCGGATATGGTGGAGGAGGCGGAGGTTATGGTGGAGGCCGTCGTGAGGGGGGAGGAGGTGGTGGATATGGAGGAGGCGGTGGCTATGGAGGTGGAGGTGGTGGTGGTTCCAGATACTCAAGGGGAGGTGGTGATTCTGAAGGAAACTGGAGGAATTAG 546 0.5476 MAEAEYRCFVGGLAWATDNEALEKAFSHFGEIVESKVITDRDTGRSRGFGFVTFSSEQSLKDAIEGMNGQDLDGRNITVNEAQSRGSGGGGGGGGFRSGGGGGGYSSGGGGYSRGGGGRGYGSGDRRDGGGYGGGGGGYGGGRREGGGGGGYGGGGGYGGGGGGGSRYSRGGGDSEGNWRN 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05864 181 MobiDBLite consensus disorder prediction 80 103 - -
Trre5g05864 181 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 77 IPR000504 GO:0003723
Trre5g05864 181 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 84 IPR000504 GO:0003723
Trre5g05864 181 SUPERFAMILY RNA-binding domain, RBD 6 116 IPR035979 GO:0003676
Trre5g05864 181 Gene3D - 1 114 IPR012677 -
Trre5g05864 181 PANTHER GEO13361P1-RELATED 4 173 - -
Trre5g05864 181 SMART rrm1_1 7 80 IPR000504 GO:0003723
Trre5g05864 181 MobiDBLite consensus disorder prediction 116 181 - -
Trre5g05864 181 CDD RRM2_NsCP33_like 7 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05864 Trre-Chr5 58338236 58339077 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05864 8 86 Eukaryotic Initiation Factors Gene Family AT2G23350 34.177 5.51e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05864 - K13195 csin:114313582 149.058