Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05860 ATGGTGGTGGATCGAAGATTCATATTTTGGTTTGGGTTATTGCTTTTGTTTCTGTGTTTTGAGGTAACATTTCAACAGATTGAGCCATTAAGTTCTTCTTTGGAAAAACAATCACTTCTTCAACTAAGAGCTTCTTTGGGTTTAAGAACCAAAGAATGGCCAAGAAAACCAGACCCTTGCTTAATCTGGGTTGGTATTACATGTCAGAATGGTCGTGTTGTTGGGATCAATATATCTGGTTTTAGAAGAACAAGAATTGGTAGAAGAAACCCTCAATTTTCTGTTGATGCTTTGGTTAATTTCACTTTATTGCAGTCTTTTAATGCCTCCAATTTCTACCTTCCTGGTACTATTCCTGATTTGTTTGGTATTAGTCTCAATTCGCTTCGCGTGCTTGATCTTCGTTCTTGTTCTATTGTCAATGCTATTCCTAACACTATTGGGAATTTGACTAGTCTTACTAGTCTTTATCTTTCTCATAACAATCTTACTGGAACTGTTCCTGATAGTTTAGGTCAACTCTCCGCACTTTCGGTTCTTGATCTTTCGGGGAATTCTTTTACTGGAACTATACCGGAATCTTTTGCCTCTCTTAAAAATCTTTCTTCCCTTGACTTGTCTGGCAATTTTTTTTCCGGGGCTATTCCTTCAGGTATAGGGACTCTTTCCAGGTTACAGTATTTGAACCTTTCGGGTAATGACCTAAATTCTTTGCCTGTGAAGTTGGGAGGTCTTACTAGCTTGGTTGACCTTGATCTTAGTGAGAATTCTTTCTCCGGCGGTGTTTTTCCGGATTTGAAAGGGTTGAGGAACTTGCGGAGAATGATACTTGGAAACAGCATGCTCAATGGACCATTGCCGGCGGACTTGTTTACTGTTTCATTGCAGTTGCAGAGTGTAGTTCTGAGGAAAAATAATTTGACTGGTTCTTTGCCTGATGAGTTGTGGTCTCTGCCGAGATTGACGTTCGTTGACGTGTCTTTGAATAGCTTCAGTGGTCTGCTTCCCAATTCTAGTTCTGATGCTGTTGGTTCTACTGTTGCCGTGCTCAATATTTCTCATAACAAGTTTTATGGAGGTCTCACACCTGTGCTCAGAAGGTTCAGTTTTGTTGATCTTTCAAACAATTATTACGAGGGTAAGGTTCTGGATTTCATGCATAACGTATCAATCGATAGTAACTGCCTGCAGAATGCGACAAATCAGAAGTCAACGGTGGAATGTACATCATTTTATGCGGACAAGGGCCTCACTTTTGACAATTTTGGACGACCGAATACGACAAAATCCACCGCCGGGAAGAGTAATAAAACTAAAATTATATTGGCGGCAGTCTTAGGTGGACTTGGTTTACTTGCACTTTTGGCCTTGCTACTGGTACTGTGGCTTCTGTGCACTCGGAAGAGGGGTAATTCAAGTCCAAGGGGAAATGGTGTGGGCCCTGCTCCTGCTGGAGGCAGTCCTCCGCCTCCTGGTGTATCGGTAAACCTTGCAAATGCAGGAGACTCGTTTACGTATCATCAGTTGCTTCAGGCAACAGGAGATTTTAATGATGCAAATCTTATAAAACATGGCCACACTGGAGATTTATTCAATGGTGTTTTAGAAAATGGGATTCCTGTCGTCATCAAAAGGATCGACATGCGGTCAACGAAAAAGGATGCTTACCTATTGGAATTGGATTTTTTTAATAAGGTTTCTCATCAAAGATTTGTTCCCTTGTTAGGTCATTGCTTAGAAAACGAGAACGAGAAGTTCCTGGTTTATAAACATATGCCGAAAAGGGACTTGTCTAATTGCTTATTCTTCAAAAACACCACCTCAGAAGATGGTACTTTGCAATCATTGGACTGGATAACTAGGTTAAAGATTGCTACTGGAGCAGCAGAGGCCATATCGTATCTTCATCATGAGTGTATTCCACCTATTGTTCACAGAGATATTCAAGCGAGCAGTATACTTCTTGATGACAAATATGAAGTTCGGTTAGGGAGTCTAAGTGAAACATGTGCACAAGAAGGTGATAGCCATCAAAGTAAAATCACCCGGTTTCTGCGACTGCCTCAGTCTTCTGAACAAGGCGCATCTGGTTCATCAACACCAATTTGCGCCTATGACGTTTATTGCTTCGGGAAAGTGTTACTTGAACTGGTGACTGGTAAGCTGGGAATTAGTGCATCCAGTGAGAGTGATTTAAAGGATTGGCTTGATCAAATTCTCCCTTGCATTAGCATGTATGACAAGGAGCTTGTGACAAAAATCGTTGACCCGTCTATGGTTGTGGATGAGGATTTCTTAGAAGAAGTGTGGGCAATAGCCATTGTTGCCAGGTCTTGCCTAAACCCGAAACCTTCAAGACGACCCCCGATGAGATATGTTTTGAAGGCTTTAGAAAACCCTTTAAAAGTTGTAAGAGAAGAAAGTTCGAGTTCTGCGCGGCTTAAAGCAACCTCTTCTAGAGGCTCTTGGAATGCTACATTGTTCGGTAGCTGGCGTCAGAGTTCTGATGTAACGACAGTCCCTGCAGCTTCTGGTACAAAATTAGAAGGAGCTAGTAGTTTGAAGCTTTCAGCCACTAGTAGTTCATCCTCGCGGAGACGTCATTCAAATGAGATATGCCCCGAGCCATCATTTCGATTACATGATGTAGAGAGGCTGGAACATGAATAA 2670 0.4172 MVVDRRFIFWFGLLLLFLCFEVTFQQIEPLSSSLEKQSLLQLRASLGLRTKEWPRKPDPCLIWVGITCQNGRVVGINISGFRRTRIGRRNPQFSVDALVNFTLLQSFNASNFYLPGTIPDLFGISLNSLRVLDLRSCSIVNAIPNTIGNLTSLTSLYLSHNNLTGTVPDSLGQLSALSVLDLSGNSFTGTIPESFASLKNLSSLDLSGNFFSGAIPSGIGTLSRLQYLNLSGNDLNSLPVKLGGLTSLVDLDLSENSFSGGVFPDLKGLRNLRRMILGNSMLNGPLPADLFTVSLQLQSVVLRKNNLTGSLPDELWSLPRLTFVDVSLNSFSGLLPNSSSDAVGSTVAVLNISHNKFYGGLTPVLRRFSFVDLSNNYYEGKVLDFMHNVSIDSNCLQNATNQKSTVECTSFYADKGLTFDNFGRPNTTKSTAGKSNKTKIILAAVLGGLGLLALLALLLVLWLLCTRKRGNSSPRGNGVGPAPAGGSPPPPGVSVNLANAGDSFTYHQLLQATGDFNDANLIKHGHTGDLFNGVLENGIPVVIKRIDMRSTKKDAYLLELDFFNKVSHQRFVPLLGHCLENENEKFLVYKHMPKRDLSNCLFFKNTTSEDGTLQSLDWITRLKIATGAAEAISYLHHECIPPIVHRDIQASSILLDDKYEVRLGSLSETCAQEGDSHQSKITRFLRLPQSSEQGASGSSTPICAYDVYCFGKVLLELVTGKLGISASSESDLKDWLDQILPCISMYDKELVTKIVDPSMVVDEDFLEEVWAIAIVARSCLNPKPSRRPPMRYVLKALENPLKVVREESSSSARLKATSSRGSWNATLFGSWRQSSDVTTVPAASGTKLEGASSLKLSATSSSSSRRRHSNEICPEPSFRLHDVERLEHE 889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05860 889 Pfam Leucine rich repeat 153 209 IPR001611 GO:0005515
Trre5g05860 889 Pfam Protein tyrosine and serine/threonine kinase 522 795 IPR001245 GO:0004672|GO:0006468
Trre5g05860 889 Gene3D Ribonuclease Inhibitor 294 408 IPR032675 -
Trre5g05860 889 FunFam Putative LRR receptor-like serine/threonine-protein kinase 592 817 - -
Trre5g05860 889 Gene3D Transferase(Phosphotransferase) domain 1 592 820 - -
Trre5g05860 889 FunFam Probable LRR receptor-like serine/threonine-protein kinase At2g16250 32 191 - -
Trre5g05860 889 Gene3D Ribonuclease Inhibitor 32 192 IPR032675 -
Trre5g05860 889 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 398 821 - -
Trre5g05860 889 SUPERFAMILY L domain-like 94 385 - -
Trre5g05860 889 ProSiteProfiles Protein kinase domain profile. 516 802 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g05860 889 Gene3D Ribonuclease Inhibitor 193 293 IPR032675 -
Trre5g05860 889 ProSiteProfiles Leucine-rich repeat profile. 224 246 IPR001611 GO:0005515
Trre5g05860 889 MobiDBLite consensus disorder prediction 471 494 - -
Trre5g05860 889 FunFam Probable LRR receptor-like serine/threonine-protein kinase At2g16250 293 424 - -
Trre5g05860 889 FunFam Leucine-rich repeat receptor protein kinase EMS1 192 289 - -
Trre5g05860 889 SUPERFAMILY Protein kinase-like (PK-like) 497 797 IPR011009 -
Trre5g05860 889 Gene3D Phosphorylase Kinase; domain 1 493 591 - -
Trre5g05860 889 Pfam Leucine Rich Repeat 128 150 IPR001611 GO:0005515
Trre5g05860 889 FunFam Predicted protein 486 591 - -
Trre5g05860 889 SMART LRR_typ_2 222 245 IPR003591 -
Trre5g05860 889 SMART LRR_typ_2 150 173 IPR003591 -
Trre5g05860 889 SMART LRR_typ_2 174 197 IPR003591 -
Trre5g05860 889 SMART LRR_typ_2 318 341 IPR003591 -
Trre5g05860 889 SMART LRR_typ_2 198 220 IPR003591 -
Trre5g05860 889 SMART LRR_typ_2 126 149 IPR003591 -
Trre5g05860 889 MobiDBLite consensus disorder prediction 842 867 - -
Trre5g05860 889 MobiDBLite consensus disorder prediction 842 877 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05860 Trre-Chr5 58268237 58272820 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05860 35 689 Miscellaneous Gene Families AT2G16250 57.057 0.0 731
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIV Trre5g05860 PK_Tyr_Ser-Thr 1.7e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05860 - - gmx:100805769 1321.99