Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05859 ATGGCACCTTCCGCCAATTCACCCGGCGGTTCCGTGCCGTTGCTAACAAACCGAACATTAGGTCTCAAATTCTACTACTTACTCCTCATTTTACTCGCAATCGTGATCGCAGTTATTCTCCTAATCGTTATCTGCATTCGCCGGAATCGAAGCTCAAAAAAGAGCAAAATGCGAGTGAAGCATAGTTCCGGCACAATTCCACTTGTTTCTAAGGAGATCGTGGAGGTGATTAAGATCGAACAAAGTGTTGATGTTGAATCGAAGATACAGAAACAAGTAGAGTGTGAGATCGAAGAGTGTAGTAGTGTGTCGGTGGAGTCTCCGTCTCAGAACATAGGTTGGGGACGGTGGTATAGTCTGAAGGAATTGGAGAATGCAACCGATGGATTTGCTGAAGGGAACGTGATCGGAGAAGGAGGTTATGGAATTGTATACAGAGGAATTTTACAAGATGGTTCTGTGGTTGCTGTGAAAAATCTTCTCAACAATAAGGGTCAAGCAGAGAAAGAGTTTAAGGTGGAGGTTGAAGCCATTGGAAAAGTGAGGCATAAGAATTTGGTTGGATTGGTCGGATATTGTGCGGATGGTGCTCAAAGGATGCTTGTTTATGAATATGTTGACAATGGAAATTTGGAGCAGTGGTTGCATGGTGATGTAGGACCTGTTAGTCCCTTGACTTGGGATATACGAATGAAGATTGCTGTTGGGACAGCAAAAGGGCTAGCCTATTTGCACGAAGGCTTAGAACCCAAAGTTGTCCACCGAGATGTAAAATCTAGCAATATTCTCTTGGACAAAAAATGGAATGCTAAAGTATCAGACTTTGGACTTGCTAAGCTCTTAGGGTCTGGGAAAAGCTATGTGACAACACGTGTAATGGGGACATTTGGATATGTTTCACCTGAGTATGCAAGCACGGGTATGCTTAATGAGGGCAGTGATGTTTATAGTTTTGGGATTCTACTCATGGAGCTAGTTACAGGAAGAAGTCCCATTGATTATTCTAGAGCACCTGCAGAGATGAACTTGGTTGATTGGTTTAAAGGAATGGTAGCAAGTCGTCGTGGTGATGAGCTAGTTGATCCTTTGATCGAGATTCAGCCCTCTCCAAGATCTTTGAAGCGAGCTTTACTGGTCTGTCTTCGCTGTATAGATTTGGATGCCAATAAGCGACCAAAGATGGGTCAAATTGTTCATATGCTTGAGGCAGATGATTTCCCCTTTCGTTCTGAACTTCGAACTAGAGAGAAAGATCCTGTTCCCTCTCAGGTAGACCTTTCCAAAAAGATTCCGTATCCAACAAGACATGTGGAGCCTGTATATAAAGCGAGCTGGAGATGA 1341 0.4348 MAPSANSPGGSVPLLTNRTLGLKFYYLLLILLAIVIAVILLIVICIRRNRSSKKSKMRVKHSSGTIPLVSKEIVEVIKIEQSVDVESKIQKQVECEIEECSSVSVESPSQNIGWGRWYSLKELENATDGFAEGNVIGEGGYGIVYRGILQDGSVVAVKNLLNNKGQAEKEFKVEVEAIGKVRHKNLVGLVGYCADGAQRMLVYEYVDNGNLEQWLHGDVGPVSPLTWDIRMKIAVGTAKGLAYLHEGLEPKVVHRDVKSSNILLDKKWNAKVSDFGLAKLLGSGKSYVTTRVMGTFGYVSPEYASTGMLNEGSDVYSFGILLMELVTGRSPIDYSRAPAEMNLVDWFKGMVASRRGDELVDPLIEIQPSPRSLKRALLVCLRCIDLDANKRPKMGQIVHMLEADDFPFRSELRTREKDPVPSQVDLSKKIPYPTRHVEPVYKASWR 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05859 446 ProSiteProfiles Protein kinase domain profile. 130 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g05859 446 ProSitePatterns Serine/Threonine protein kinases active-site signature. 252 264 IPR008271 GO:0004672|GO:0006468
Trre5g05859 446 FunFam Probable serine/threonine-protein kinase At1g01540 110 205 - -
Trre5g05859 446 ProSitePatterns Protein kinases ATP-binding region signature. 136 158 IPR017441 GO:0005524
Trre5g05859 446 Gene3D Transferase(Phosphotransferase) domain 1 206 413 - -
Trre5g05859 446 CDD STKc_IRAK 136 402 - -
Trre5g05859 446 SMART serkin_6 130 408 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g05859 446 FunFam Putative receptor-like serine/threonine-protein kinase 206 416 - -
Trre5g05859 446 SUPERFAMILY Protein kinase-like (PK-like) 113 421 IPR011009 -
Trre5g05859 446 PANTHER OS01G0323000 PROTEIN 19 418 - -
Trre5g05859 446 Gene3D Phosphorylase Kinase; domain 1 83 205 - -
Trre5g05859 446 Pfam Protein kinase domain 132 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05859 Trre-Chr5 58258738 58262168 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05859 10 402 Receptor kinase-like Gene Family AT4G02010 41.294 1.55e-93 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Trre5g05859 Pkinase 6.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05859 - - gmx:100779420 701.434