LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre5g05855	ATGGCTGATAACTCAGATGCCAATTCTCCAACACAATCTCCACCCGATTCAGCGCCGCCGCCACCGGAGGCAGATAATTCGTCTCCACCACCACCAGAGGCTGATAATTCGTCCCCACCACCTGCTCCGTCGTCTCCACCGCCATCTTCACCTCCTCCTTCATCTCCGCCGCCTTCTGACTCGTCTCAGTCTCCACCATCACCACCACCGCCGCCACCGTCACAGTCACCCCCCGGCAGCACACCATCTCCTCCGCATCGGGAAGTGTTTTCTCCTCCACCACCACAGCATTACCGTTTGTCCCCGCCAAAATCATCATCAAACTCGAATAAGAACGATAATACATATGAAGAAAGTGCAAATGATTTGAGTGTGGGAACTATAGTAGGAGTTGCAGGTGGAGCTGGTTTATTGCTCCTTGTCATTATCATACTCTTTATTGTATGTTCAAAAAGGAAGAGGAGACCACAACCTCACATTCATTACTACACCAATCAACCACGAGGTCCAAATCAGTATGCATACAATAAAGGTGATGTATACAATAAAGGTGATCACGTGCTTAATATTCCCCCGCCATCTCAAGGTGGAGGTTGGGGTCCACCACCAACAGCCGGTGGTCAACCACCGCCACCGCAACTTGTTAGCAGTGACTTTAGCAACTCCAGTTACTCTGGGCCCCATGGTCCAGTATTGCCACCACCACATCCAACAGTTGCACTTGGGTTCAACCAAAGCTCATTCACCTTTGATGAATTATCAGCTGCTACTATTGGATTTGCACAACGAAACTTGTTAGGTCAAGGTGGGTTTGGATATGTACATAAAGGTGTTCTTCCTAATGGTAAGGAAATAGCAGTGAAGAGCCTTAAATCAACTGGTAAACAAGGTGACAGAGAGTTTCAAGCTGAGGTCGACACTATCAGTCGTGTTCATCATCGCTATCTTGTTTCGCTTGTTGGATATTGTATTACTGATTCTAAGAAGATTCTCGTTTATGAATTTGTTCCTAACAAGACCCTTGATTATCACCTTCATGGAAAAGGTCGACCTGTGATGGATTGGGGCACAAGGCTTAAAATTGCGATTGGATCGGCCAAAGGGCTTGCTTATTTACATGAGGATTGTCACCCTCGTATCATTCACCGAGACATAAAGGGTGCAAATATTTTACTTGAAAACGACTTTGAAGCAAGAGTGTCTGATTTTGGATTGGCAAAGTTTACTCAAGACACTAACACTCATGTTTCTACTCGTGTCATGGGAACATTTGGGTATATGGCTCCTGAGTATGCATCAAGTGGTAAGCTAACTGATAAATCTGATGTCTTCTCCTATGGAATTATGCTTTTGGAGCTCATAACTGGACGACGACCAGTCGGTAACACCGGTGATTATGAAGAAGACAGTTTGGTTGATTGGGCTAGACCACTTTGTGCAAAAGCATTGGAGAATGGAACATTAGTTGGATTGGTGGATATACGTTTAGAAGAAAATTATGATAAACATGAGATGCAACGTATGATAGCTTGTGCTGCTGCTGGTGTTAGACACTCAGCAAGAAGGCGTCCAAGAATGAGCCAGATTGTGCGTGTGTTGGAGGGAGATGCTTCACTAGATCAAGTGCTTAGTCAGGATGGAGTTAAACCTGGACAGAGTGCAATGTATAGCAGTGCAAGTGGAGATTATGATGCTGGGGCATACATTGCTGATATGAAAAAGTTCAGGAAACTAGCATTGGACAGTGGCGCCGCCCCAAGCAGTGAGTTCGGTGCAACGAGTGAGTATGGCCTTAATCTTTCTGCCTCAAGCAGTGATCAATCTTCTACTGAATATAGCAGAAGGACTGCAGCTGAAACAGAAAGTAGCAACTTTACTCCATGA	1884	0.4544	MADNSDANSPTQSPPDSAPPPPEADNSSPPPPEADNSSPPPAPSSPPPSSPPPSSPPPSDSSQSPPSPPPPPPSQSPPGSTPSPPHREVFSPPPPQHYRLSPPKSSSNSNKNDNTYEESANDLSVGTIVGVAGGAGLLLLVIIILFIVCSKRKRRPQPHIHYYTNQPRGPNQYAYNKGDVYNKGDHVLNIPPPSQGGGWGPPPTAGGQPPPPQLVSSDFSNSSYSGPHGPVLPPPHPTVALGFNQSSFTFDELSAATIGFAQRNLLGQGGFGYVHKGVLPNGKEIAVKSLKSTGKQGDREFQAEVDTISRVHHRYLVSLVGYCITDSKKILVYEFVPNKTLDYHLHGKGRPVMDWGTRLKIAIGSAKGLAYLHEDCHPRIIHRDIKGANILLENDFEARVSDFGLAKFTQDTNTHVSTRVMGTFGYMAPEYASSGKLTDKSDVFSYGIMLLELITGRRPVGNTGDYEEDSLVDWARPLCAKALENGTLVGLVDIRLEENYDKHEMQRMIACAAAGVRHSARRRPRMSQIVRVLEGDASLDQVLSQDGVKPGQSAMYSSASGDYDAGAYIADMKKFRKLALDSGAAPSSEFGATSEYGLNLSASSSDQSSTEYSRRTAAETESSNFTP	627

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre5g05855	627	MobiDBLite	consensus disorder prediction	101	117	-	-
	Trre5g05855	627	FunFam	Proline-rich receptor-like protein kinase PERK1	336	544	-	-
	Trre5g05855	627	MobiDBLite	consensus disorder prediction	195	210	-	-
	Trre5g05855	627	MobiDBLite	consensus disorder prediction	587	627	-	-
	Trre5g05855	627	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	380	392	IPR008271	GO:0004672\|GO:0006468
	Trre5g05855	627	Gene3D	Phosphorylase Kinase; domain 1	237	335	-	-
	Trre5g05855	627	SMART	serkin_6	260	509	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre5g05855	627	ProSitePatterns	Protein kinases ATP-binding region signature.	266	288	IPR017441	GO:0005524
	Trre5g05855	627	PANTHER	PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4	134	587	IPR047117	-
	Trre5g05855	627	MobiDBLite	consensus disorder prediction	188	237	-	-
	Trre5g05855	627	MobiDBLite	consensus disorder prediction	211	227	-	-
	Trre5g05855	627	SUPERFAMILY	Protein kinase-like (PK-like)	241	533	IPR011009	-
	Trre5g05855	627	MobiDBLite	consensus disorder prediction	1	117	-	-
	Trre5g05855	627	Gene3D	Transferase(Phosphotransferase) domain 1	336	547	-	-
	Trre5g05855	627	ProSiteProfiles	Protein kinase domain profile.	260	539	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre5g05855	627	MobiDBLite	consensus disorder prediction	13	100	-	-
	Trre5g05855	627	FunFam	Adenine nucleotide alpha hydrolase-like domain kinase	236	335	-	-
	Trre5g05855	627	MobiDBLite	consensus disorder prediction	584	627	-	-
	Trre5g05855	627	Pfam	Protein tyrosine and serine/threonine kinase	263	531	IPR001245	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre5g05855	Trre-Chr5	58218397	58221885	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre5g05855	127	621	Trihelix Transcription Factor Family	AT1G70460	49.501	8.49e-152	453

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_PERK-1	Trre5g05855		PK_Tyr_Ser-Thr	1.5e-43	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre5g05855	-		-	psat:127085055	768.074