Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05839 ATGGAGGGTGGTGAGAGAATCAGTGATGAAATGGATCTCGTTCATTCAGAAAATCGTAATAACAACAATAAGGATCAAAATGCTGCTGTTAATTCCGTTCATTTGGATCAAGAAATGCTTGATCAAGGTGATGCTGATACAACAAATGTCAATTCTACCCCTACTCATCAACTTGAACAACTCAATGTCATTACCCCAAAACCTAAAGTTAAGAATGTTACAGAAGTCAATAATAATAATGTACTAAACAGTGCTAACGAGATGACTGCTTATGATGAGTCGGGTACGGCTATGGAGCGAGAAGCGTTTATGAAAGAGCTCGAGACTTTCTACAGATCGAGGTCCTTGGAATTTAAGCCTCCTAAGTTTTATGGAGTGCCATTGAATTGTCTCAAGTTATGGAGATCTGTTATCAAACTTGGTGGCTATGAAGTGGTAACTGGATCGAAGTTGTGGCGGCAAGTAGGAGAGTCTTTCCACCCTCCTAAGACCTGCACTACAGTCTCATGGACGTTTAGAATCTTTTATGAGAAGGCACTTTTAGAGTATGAAAAGCATAAGAGAGAGATTGGGGAGATACAGCTCCCTGTTGGATCACTCCATCAACCTTCAAGTGTGGAAAAAGAGACCGCTGTTTATCAGACTCCAGGCTCAGGTAGGGCACGAAGGGATGCGGCAGCACGTGCAATGCAAGGTTGGCATACTCAGCGTCTTATGGGATATGGTGAGGTTGCTGAGTCAGCTGTTAAGGACAAGAACTTCAATCCCACACCAAAACGTGAAAAGAACCTCAAGAATATTGGTGTGATCAACAAACAGAGGACACCATCTGGTATGGACCATGCCGACAAAGCTACAAATATAGAAGGAGATAGGCAGTTGGTCACAGCAGTAGTGGACATTGGACCCCCAGCTGACTGGGTGAAGATTAATGTGCGGGAAACGAAGGATTGCTTTGAAGTGTATGCACTAGTTCCTGGGCTCCTTCGTGAGGAGGTGCGAGTCCAATCCGATCCAGTTGGACGACTTGTTATAACTGGTATGCCAGAACATGTCGACAATCCTTGGGGTATTACCCCCTTCAAAAAGGTTGTGAACTTACCTGCAAGGATTGATCCACTCCAGACATCTGCTGTTGTTAGTTTGCATGGTCGACTATTTGTACGCGTTCCTTTTGAGCAGGGAGCTGTATGA 1194 0.4414 MEGGERISDEMDLVHSENRNNNNKDQNAAVNSVHLDQEMLDQGDADTTNVNSTPTHQLEQLNVITPKPKVKNVTEVNNNNVLNSANEMTAYDESGTAMEREAFMKELETFYRSRSLEFKPPKFYGVPLNCLKLWRSVIKLGGYEVVTGSKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLEYEKHKREIGEIQLPVGSLHQPSSVEKETAVYQTPGSGRARRDAAARAMQGWHTQRLMGYGEVAESAVKDKNFNPTPKREKNLKNIGVINKQRTPSGMDHADKATNIEGDRQLVTAVVDIGPPADWVKINVRETKDCFEVYALVPGLLREEVRVQSDPVGRLVITGMPEHVDNPWGITPFKKVVNLPARIDPLQTSAVVSLHGRLFVRVPFEQGAV 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05839 397 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 20 394 IPR045147 GO:0006357
Trre5g05839 397 Gene3D - 293 396 IPR008978 -
Trre5g05839 397 CDD ACD_sHsps_p23-like 312 391 - -
Trre5g05839 397 SMART bright_3 98 189 IPR001606 GO:0003677
Trre5g05839 397 FunFam AT-rich interactive domain-containing protein 3 97 196 - -
Trre5g05839 397 FunFam AT-rich interactive domain-containing protein 3 288 396 - -
Trre5g05839 397 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 296 397 IPR002068 -
Trre5g05839 397 CDD ARID 99 184 - -
Trre5g05839 397 SMART ARID_2 94 184 - -
Trre5g05839 397 ProSiteProfiles ARID domain profile. 97 188 IPR001606 GO:0003677
Trre5g05839 397 SUPERFAMILY HSP20-like chaperones 305 392 IPR008978 -
Trre5g05839 397 Pfam ARID/BRIGHT DNA binding domain 99 184 IPR001606 GO:0003677
Trre5g05839 397 Pfam Hsp20/alpha crystallin family 312 393 IPR002068 -
Trre5g05839 397 Gene3D - 97 195 IPR036431 GO:0003677
Trre5g05839 397 SUPERFAMILY ARID-like 88 195 IPR036431 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05839 Trre-Chr5 58047297 58052516 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05839 82 394 ARID Transcription Factor Family AT1G76510 72.293 2.56e-154 441
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Trre5g05839 ARID 2.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05839 - - psat:127088333 651.744
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05839 5 58047297 58052516 Trre5g05839 5 58047297 58052516 ECH