Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05838 ATGATGTCTAACCATGATGCTGAGAGAGGCCAAGGGCTTCCGTTATCCATTACACCACAACTACAAGTCCAGACACCGACCATTGATACCACTGTAAATAACAATGGTCAAGCATCATCCTCCACCGTTGGACGCCGCCCCCTAGGGCGTCCACGTGGAGCCAAGAACAAACCTAAGATGCCTGTCGTAGTAACTCGAGACATATCCAATGCTCTCCAGTCTCATTTGCTTGAGATCAATGATGGAGATGATGTTTTGAAATGTCTCTTTAATTTCGCTCATCGTCAAGGGAGAGGGATCCACATCCTCAGTGGAAATGGAGCGGTGAAACACATCACAATTCATCATCCCATGGGAAGGACTATAACCATAACTAGAAGGTTTGATATTCTTTCGATTTCTGGGAAAATTATCCCATTATCAACACCGGAAAATGCTGAAGATTTGATGATTTACTTATCAAGTGGTACTGGTAAGGTGATTTGGGGGACTCCCGATCCCACCGCCCCTTTTGTGGCTTCAGGCTTGGTGAAATTGACGACTGTTTCTTTTGCTATCATTCAATAA 567 0.4462 MMSNHDAERGQGLPLSITPQLQVQTPTIDTTVNNNGQASSSTVGRRPLGRPRGAKNKPKMPVVVTRDISNALQSHLLEINDGDDVLKCLFNFAHRQGRGIHILSGNGAVKHITIHHPMGRTITITRRFDILSISGKIIPLSTPENAEDLMIYLSSGTGKVIWGTPDPTAPFVASGLVKLTTVSFAIIQ 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05838 188 MobiDBLite consensus disorder prediction 29 60 - -
Trre5g05838 188 MobiDBLite consensus disorder prediction 29 44 - -
Trre5g05838 188 Pfam Plants and Prokaryotes Conserved (PCC) domain 74 165 IPR005175 -
Trre5g05838 188 ProSiteProfiles PPC domain profile profile. 69 188 IPR005175 -
Trre5g05838 188 CDD DUF296 75 163 IPR005175 -
Trre5g05838 188 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 35 185 IPR014476 GO:0003680
Trre5g05838 188 SUPERFAMILY AF0104/ALDC/Ptd012-like 70 164 - -
Trre5g05838 188 Gene3D - 73 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05838 Trre-Chr5 58043319 58043885 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05838 45 185 AT-hook Motif Nuclear Localized (AHL) Family AT3G60870 44.681 2.68e-35 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05838 - - psat:127088334 192.2