Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05836 ATGAGTGCGAGAGAGGATATGACATTTAACCATGATGTTGGGAGAGGCAAAGAGCTTCAGTCGTCAATTACCCCACAACTACAACCCCAAACACCATGTCTTGATACCATGACTGAAAACAACCATCGTGCATCATCCTCTGGTGTCGGCCTCCGCCCGCGAGGGCGTCCACCTGGTGCAAAGAACAAGCCCAAACCGCCTATCGTAATAACACATGATATTCCCAACATGCTCAATTCTCATTTGCTTGAGATCGCTGCTGGAGACGATGTGTCAAAATGTCTATATGATTACGTTCGTCATGAAGGGAAAGGCATCTGCATCCTCGATGGAAATGGATCCTTGACACACGTCAAACTTCGTCAACCCACTGGGGGGATCGTAACCCTAGAGGGAAAGTTTGAGATTTGTTCGATTTCTGGGACAATTCTCCCTTCGTCGACACCAATAGGTGTTGGAGGTTTGACAGTTCACTTATCAAGCAACACTGGACAAATGATTGGGGGGAGTGTGATGCCCCCTCTTGTGTCTTCAGACCCGGTGAAATTGATAATTGCTTCCTTTGATATTGATCCATCTGAAGAGCTGATTTCAGTGGTCAATGGTCAGAAAGAACATGAACCTTCACGCCTTGATGTAGCTGGACAAGTGGCTGAAGGTGATGATGGCTTGTTCAGTGTTGGAGGATCAACATCTGAAATGAGAAATGTGATAGGTAGTAGCACAAGTCATCCCTCGTCTTCTGCTTCGATTCGTTTATTTGGACGAGATATTACTGTAACAACAACTTCACCACCCAAATCTCCCCGCTTTTAG 816 0.4608 MSAREDMTFNHDVGRGKELQSSITPQLQPQTPCLDTMTENNHRASSSGVGLRPRGRPPGAKNKPKPPIVITHDIPNMLNSHLLEIAAGDDVSKCLYDYVRHEGKGICILDGNGSLTHVKLRQPTGGIVTLEGKFEICSISGTILPSSTPIGVGGLTVHLSSNTGQMIGGSVMPPLVSSDPVKLIIASFDIDPSEELISVVNGQKEHEPSRLDVAGQVAEGDDGLFSVGGSTSEMRNVIGSSTSHPSSSASIRLFGRDITVTTTSPPKSPRF 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05836 271 CDD DUF296 79 188 IPR005175 -
Trre5g05836 271 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 40 236 IPR014476 GO:0003680
Trre5g05836 271 ProSiteProfiles PPC domain profile profile. 75 209 IPR005175 -
Trre5g05836 271 Gene3D - 79 205 - -
Trre5g05836 271 MobiDBLite consensus disorder prediction 1 68 - -
Trre5g05836 271 MobiDBLite consensus disorder prediction 15 47 - -
Trre5g05836 271 Pfam Plants and Prokaryotes Conserved (PCC) domain 80 189 IPR005175 -
Trre5g05836 271 SUPERFAMILY AF0104/ALDC/Ptd012-like 76 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05836 Trre-Chr5 58034554 58035369 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05836 45 196 AT-hook Motif Nuclear Localized (AHL) Family AT1G76500 49.693 5.59e-45 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05836 - - psat:127088334 269.626