Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05835 ATGGCATACCAAAGTTCGGGATCAAGTTCAAGTTCTGGGTTTCAATTGTTGAATTCTCCTTTTGGAGATACAACTTATACTAAGGTTTTTGTTGGAGGATTGGCATGGGAGACCCAGAGTGAAACTATGCGCCGTTATTTTGAGCAGTTTGGGGATATTCTCGAAGCAGTCGTCATCACCGATAAGAATACTGGGAGATCCAAAGGCTATGGTTTTGTGACTTTCCGTGATCCAGAAGCCGCTAGGAGAGCTTGTGCGGATCCAAGTCCTGTTATTGATGGTAGAAGAGCTAATTGTAATTTGGCTTCGTTGGGTCGACCACGACCTCCTATCACCTATGGACGGGTAAGACCAGCATCCTCTTATGTTGGAAGTGTGCAACCGGTCCGTGGTGCTTACGTCGGAGGTTATGGCTACCAACAACCACTTTCCTATGGCTATCAACAAGGAATGGTTTATCCTCCTTACGGGTATACGGCATATGGACCTGAATACGTCTACCCACAGAGTATGTATGCGGGTCAACAATACCTTCAGATATATGGTGTGCCCGGTGCAGTGAATACAAATATTTATCCTTATGGACAATTGGGTCAAGCTATTCATGGTGGTCATGGTTATACAGCAATGCAAGGTTATACAGTACCAAGTCATCAACTTGTTCCCTATGGTGGTGGATCCAATGTTAATGTAATAACAACTTCATCTATGTCTGCAAATCAAACACCATATCCTAGTGGAATTGCTACACCAATTCCAGGCCAACCACAATTTATTGTTTCTCCTCAGTTCATGCAAGGTAGCGGTCCTGACCAAACAACTGATATCCTTAGTTTGCAGCAGGACTAA 849 0.4405 MAYQSSGSSSSSGFQLLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACADPSPVIDGRRANCNLASLGRPRPPITYGRVRPASSYVGSVQPVRGAYVGGYGYQQPLSYGYQQGMVYPPYGYTAYGPEYVYPQSMYAGQQYLQIYGVPGAVNTNIYPYGQLGQAIHGGHGYTAMQGYTVPSHQLVPYGGGSNVNVITTSSMSANQTPYPSGIATPIPGQPQFIVSPQFMQGSGPDQTTDILSLQQD 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05835 282 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 21 108 - -
Trre5g05835 282 CDD RRM_RBM24_RBM38_like 27 102 - -
Trre5g05835 282 PANTHER BOULE-RELATED 5 239 - -
Trre5g05835 282 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 27 104 IPR000504 GO:0003723
Trre5g05835 282 SUPERFAMILY RNA-binding domain, RBD 26 139 IPR035979 GO:0003676
Trre5g05835 282 Gene3D - 4 116 IPR012677 -
Trre5g05835 282 SMART rrm1_1 28 100 IPR000504 GO:0003723
Trre5g05835 282 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 29 85 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05835 Trre-Chr5 58029366 58032416 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05835 1 103 C2H2 Transcription Factor Family AT2G19380 37.864 6.36e-17 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05835 - - gmx:100782606 481.485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05835 5 58029366 58032416 Trre5g05835 5 58029366 58032416 ECH