Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05834 ATGGCATACCAAAGTTCGGGATCAAGTTCAAGTTCTGGGTTTCAATTGTTGAATTCTCCTTTTGGAGATACAACTTATACTAAGGTTTTTGTTGGAGGATTGGCATGGGAGACCCAGAGTGAAACTATGCGCCGTTATTTTGAGCAGTTTGGGGATATTCTCGAAGCAGTCGTCATCACCGATAAGAATACTGGGAGATCCAAAGGCTATGGTTTTGTGACTTTCCGTGATCCAGAAGCCGCTAGGAGAGCTTGTGCGGATCCAAGTCCTGTTATTGATGGTAGAAGAGCTAATTGTAATTTGGCTTCGTTGGGTCGACCACGACCTCCTATCACCTATGGACGGGTAAGACCAGCATCCTCTTATGTTGGAAGTGTGCAACCGGTCCGTGGTGCTTACGTCGGAGGTTATGGCTACCAACAACCACTTTCCTATGGCTATCAACAAGGAATGGTTTATCCTCCTTACGGGTATACGGCATATGGACCTGAATACGTCTACCCACAGAGTATGTATGCGGGTCAACAATACCTTCAGATATATGGTGTGCCCGGTGCAGTGAATACAAATATTTATCCTTATGGACAATTGGGTCAAGCTATTCATGGTGGTCATGGTTATACAGCAATGCAAGGTTATACAGTACCAAGTCATCAACTTGTTCCCTATGGTGGTGGATCCAATGTTAATGTAATAACAACTTCATCTATGTCTGCAAATCAAACACCATATCCTAGTGGAATTGCTACACCAATTCCAGGCCAACCACAATTTATTGTTTCTCCTCAGTTCATGCAAGGTAGCGGTCCTGACCAAACAACTGCAGGACTAAGAGCAGTGGAACTGCTACTTGAGTGGCGGGCTTCTAATCTAGCCTTGCAAGTATTTATTTTGCATTCTAGAGGTCATATATAG 915 0.4404 MAYQSSGSSSSSGFQLLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACADPSPVIDGRRANCNLASLGRPRPPITYGRVRPASSYVGSVQPVRGAYVGGYGYQQPLSYGYQQGMVYPPYGYTAYGPEYVYPQSMYAGQQYLQIYGVPGAVNTNIYPYGQLGQAIHGGHGYTAMQGYTVPSHQLVPYGGGSNVNVITTSSMSANQTPYPSGIATPIPGQPQFIVSPQFMQGSGPDQTTAGLRAVELLLEWRASNLALQVFILHSRGHI 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05834 304 Gene3D - 4 116 IPR012677 -
Trre5g05834 304 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 29 85 IPR000504 GO:0003723
Trre5g05834 304 SUPERFAMILY RNA-binding domain, RBD 26 139 IPR035979 GO:0003676
Trre5g05834 304 CDD RRM_RBM24_RBM38_like 27 102 - -
Trre5g05834 304 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 27 104 IPR000504 GO:0003723
Trre5g05834 304 PANTHER BOULE-RELATED 5 239 - -
Trre5g05834 304 SMART rrm1_1 28 100 IPR000504 GO:0003723
Trre5g05834 304 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 21 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05834 Trre-Chr5 58028931 58032416 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05834 16 103 C2H2 Transcription Factor Family AT2G19380 42.045 1.50e-16 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05834 - - gmx:100782606 481.485