Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05830 ATGGAAGAGGTACTTTGTGAACTAAGTGAGCATGAGAAGAAAAATGAACAAGGTTTGCCACCTGGGTTTAGGTTTCATCCAACTGATGAAGAACTCATTACCTTTTATTTGGCTTCTAAGGTTTTCAAAAATACTTGTTTCAACGATGTCAAATTTGCTGAAGTTGATCTCAATAGATGTGAGCCATGGGAACTTCCAGAAATGGCAAAGATGGGGGAAAGAGAATGGTATCTATTCAGCTTAAGAGACAGAAAATACCCAACTGGACTAAGAACAAACAGAGCAACCGGTGCTGGTTACTGGAAAGCCACCGGAAAAGACAAAGAAGTTTACAGCTGCAGTAATAATAGATCCTCTTTACTACTACTAGGCATGAAGAAGACTCTTGTTTTCTACAAAGGAAGGGCCCCTCGTGGTGAAAAGACCAAATGGGTCATGCATGAGTACCGTTTAGATAATCACTTTTCACCTTCTCATCATCCTCATACCTGCAAGGAAGAGTGGGTGATATGTAGGATATTTCATAAATCAGGAGAAAAGAGAAATTCAATACTCCAACTTCAAGCTGGTAATGCTAATGCTAATTATAATTTACCATCCAAAAAAAGTTGTTTACCACCACCTCCACATTTAATTACTAATCCAACTTCATTTACACAATTAGACCAAAATGACCAATTAATCTCCTCACATTCTCATAACATTTTCCCATTGCAACCATTCCAACCTTCTTTCCAAATCAACCACACTTGTAGAAACAACAATCTTCCATCTTCTGAACTACTTTTCAAGCCACAACAAAATTTCAACATGAAACAAACCATTCCAAAATCAGAAGCTACATTCTATGATCAATACCAATCACAATCAATTGATGATGCTATTAACCTGAGATGGATTGACAATAATAACAATAATAATTCAAGTAATAATAATCATAATTTTGAAAACTCTTCTTCATTCCCTATTGAGATGGATGCAGAATTGATTGAATTCTCAGGAACTGCTACAAATGCTGAATTTAGGGACATGTCAACTTCAACAAACTTTAACAGTAACAGAATAGGCTTAGATGTTCCTATGGGAATAGATTCTTGGCCACAGGGACAACTTGTCTAA 1119 0.3637 MEEVLCELSEHEKKNEQGLPPGFRFHPTDEELITFYLASKVFKNTCFNDVKFAEVDLNRCEPWELPEMAKMGEREWYLFSLRDRKYPTGLRTNRATGAGYWKATGKDKEVYSCSNNRSSLLLLGMKKTLVFYKGRAPRGEKTKWVMHEYRLDNHFSPSHHPHTCKEEWVICRIFHKSGEKRNSILQLQAGNANANYNLPSKKSCLPPPPHLITNPTSFTQLDQNDQLISSHSHNIFPLQPFQPSFQINHTCRNNNLPSSELLFKPQQNFNMKQTIPKSEATFYDQYQSQSIDDAINLRWIDNNNNNNSSNNNHNFENSSSFPIEMDAELIEFSGTATNAEFRDMSTSTNFNSNRIGLDVPMGIDSWPQGQLV 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05830 372 ProSiteProfiles NAC domain profile. 19 176 IPR003441 GO:0003677|GO:0006355
Trre5g05830 372 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 16 302 - -
Trre5g05830 372 FunFam NAC domain-containing protein 100-like 28 180 - -
Trre5g05830 372 Pfam No apical meristem (NAM) protein 20 151 IPR003441 GO:0003677|GO:0006355
Trre5g05830 372 SUPERFAMILY NAC domain 14 176 IPR036093 GO:0003677|GO:0006355
Trre5g05830 372 Gene3D NAC domain 28 181 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05830 Trre-Chr5 58006516 58009449 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05830 1 185 NAC Transcription Factor Family AT1G76420 72.432 7.63e-93 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre5g05830 NAM 2.7e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05830 - - gmx:100780313 390.578