Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05829 ATGATGTTAACAATGGAAGAGGTACTTTGTGAACTAAGTGAGCATGAGAAGAAAAATGAACAAGGTTTGCCACCTGGGTTTAGGTTTCATCCAACTGATGAAGAACTCATTACCTTTTATTTGGCTTCTAAGGTTTTCAAAAATACTTGTTTCAACGATGTCAAATTTGCTGAAGTTGATCTCAATAGATGTGAGCCATGGGAACTTCCAGAAATGGCAAAGATGGGGGAAAGAGAATGGTATCTATTCAGCTTAAGAGACAGAAAATACCCAACTGGACTAAGAACAAACAGAGCAACCGGTGCTGGTTACTGGAAAGCCACCGGAAAAGACAAAGAAGTTTACAGCTGCAGTAATAATAGATCCTCTTTACTACTACTAGGCATGAAGAAGACTCTTGTTTTCTACAAAGGAAGGGCCCCTCGTGGTGAAAAGACCAAATGGGTCATGCATGAGTACCGTTTAGATAATCACTTTTCACCTTCTCATCATCCTCATACCTGCAAGGAAGAGTGGGTGATATGTAGGATATTTCATAAATCAGGAGAAAAGAGAAATTCAATACTCCAACTTCAAGCTGGTAATGCTAATGCTAATTATAATTTACCATCCAAAAAAAGTTGTTTACCACCACCTCCACATTTAATTACTAATCCAACTTCATTTACACAATTAGACCAAAATGACCAATTAATCTCCTCACATTCTCATAACATTTTCCCATTGCAACCATTCCAACCTTCTTTCCAAATCAACCACACTTGTAGAAACAACAATCTTCCATCTTCTGAACTACTTTTCAAGCCACAACAAAATTTCAACATGAAACAAACCATTCCAAAATCAGAAGCTACATTCTATGATCAATACCAATCACAATCAATTGATGATGCTATTAACCTGAGATGGATTGACAATAATAACAATAATAATTCAAGTAATAATAATCATAATTTTGAAAACTCTTCTTCATTCCCTATTGAGATGGATGCAGAATTGATTGAATTCTCAGGAACTGCTACAAATGCTGAATTTAGGGACATGTCAACTTCAACAAACTTTAACAGTAACAGAATAGGCTTAGATGTTCCTATGGGAATAGATTCTTGGCCACAGGGACAACTTGTCTAA 1131 0.3625 MMLTMEEVLCELSEHEKKNEQGLPPGFRFHPTDEELITFYLASKVFKNTCFNDVKFAEVDLNRCEPWELPEMAKMGEREWYLFSLRDRKYPTGLRTNRATGAGYWKATGKDKEVYSCSNNRSSLLLLGMKKTLVFYKGRAPRGEKTKWVMHEYRLDNHFSPSHHPHTCKEEWVICRIFHKSGEKRNSILQLQAGNANANYNLPSKKSCLPPPPHLITNPTSFTQLDQNDQLISSHSHNIFPLQPFQPSFQINHTCRNNNLPSSELLFKPQQNFNMKQTIPKSEATFYDQYQSQSIDDAINLRWIDNNNNNNSSNNNHNFENSSSFPIEMDAELIEFSGTATNAEFRDMSTSTNFNSNRIGLDVPMGIDSWPQGQLV 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05829 376 ProSiteProfiles NAC domain profile. 23 180 IPR003441 GO:0003677|GO:0006355
Trre5g05829 376 FunFam NAC domain-containing protein 100-like 32 184 - -
Trre5g05829 376 Gene3D NAC domain 32 185 IPR036093 GO:0003677|GO:0006355
Trre5g05829 376 Pfam No apical meristem (NAM) protein 24 155 IPR003441 GO:0003677|GO:0006355
Trre5g05829 376 SUPERFAMILY NAC domain 18 180 IPR036093 GO:0003677|GO:0006355
Trre5g05829 376 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 20 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05829 Trre-Chr5 58006516 58009461 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05829 1 189 NAC Transcription Factor Family AT1G76420 72.487 1.90e-95 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre5g05829 NAM 2.8e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05829 - - gmx:100780313 394.045