Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05823 ATGACTCGTCCCTTCAGATTTCTCGACGAGCTCAACTCGTCTTCTTCTGATTCCACCGTCGTTGATTCCGATTTCGTCGTTATCCTCGCCCCTCTTCTCTGCGCTCTCATCTGCGTTTTAGGTCTCGTCGCCGTCGCACGTTGCGGTTGTCTCCGTCGTCTACGTCTCCCTTCCCCCGCCCTCGCTTCTCAAACTGCACCTCCCGCTGCAGCAAACAAAGGCGTTAAGAAGAAGGTTCTTCGCTCTCTACCCAAACTCACAGCAACAGAGGAATCCGCAGTTAAATTCTCCGATTGCGCTATCTGTTTGAGTGAATTCACCGCCGGTGATGAAATTCGAGTGTTACCTCAGTGCGGTCATGGATTCCACGTGTCCTGTATCGATTTGTGGCTCAGATCTCATTCTTCATGTCCATCGTGCCGTCAGATTTTGGTAGTTCCTAGATGCGATAAGTGCGGCGGAATTCCCGCTCCCGCCACAACTACCGCCGGGTCCAGCTCTACACCGGCGCCGGATTGTGAAGCTAGATTAAAGGTAAGGGAAGACGATGGAAACCGATTCTTACCATAG 570 0.5228 MTRPFRFLDELNSSSSDSTVVDSDFVVILAPLLCALICVLGLVAVARCGCLRRLRLPSPALASQTAPPAAANKGVKKKVLRSLPKLTATEESAVKFSDCAICLSEFTAGDEIRVLPQCGHGFHVSCIDLWLRSHSSCPSCRQILVVPRCDKCGGIPAPATTTAGSSSTPAPDCEARLKVREDDGNRFLP 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05823 189 CDD RING-H2_EL5-like 98 141 - -
Trre5g05823 189 SMART ring_2 99 140 IPR001841 -
Trre5g05823 189 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 15 153 - -
Trre5g05823 189 Pfam Ring finger domain 98 141 IPR001841 -
Trre5g05823 189 SUPERFAMILY RING/U-box 80 147 - -
Trre5g05823 189 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 145 IPR013083 -
Trre5g05823 189 ProSiteProfiles Zinc finger RING-type profile. 99 141 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05823 Trre-Chr5 57935332 57935901 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05823 5 189 C3H Transcription Factor Family AT1G20823 58.673 8.52e-65 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05823 - - pvu:PHAVU_009G007400g 274.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05823 5 57935332 57935901 Trre5g05823 5 57935332 57935901 ECH