Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05810 ATGAATTTGTTTTATTATTACTGGGTGTTGGTGTTGGTGGTGGTTGTGCTCCCCTATTATTTTGGAGTCAAAGGAGTTTATTCAAATTCAACAACTATTTCAAATGTCTCATTTTCAAGACCCTCTGTTGTTAATATTGGTGCTATCTTCACCTTTGATTCCTCCATTGGTAAAGTTGCTAAACTTGCTATGGAACAAGCTGTTATAGATGTCAACTCTAATTCCTCTATTCTTCATTCAACTCAACTTGTTCTTCATATGCAAACTTCTAATTGTAGCGGTTTCGATGGCATGATTCAAGCTTTGCGGTTCATGGAGACGGATGTAATTGCTATATTAGGACCACAATCTTCTGTAGTTTCTCACATAGTATCTCATGTTGCAAACGAGCTTCGTGTTCCTATGTTGTCATTTGCAGCAACAGACCCTACACTCTCGTCGTTGCAATTCCCTTTCTTTGTCAGGACGACACTCAGCGATTCGTACCAAATGACTGCTGTTTCTGAAATAATTGATTTTTATGGATGGAAGGAAGTTATTGCTATTTATGTAGATGATGATTATGGACGAAACGGTGTGTCTGCATTAGATGATGCGTTAGCAGGGAGGCGTTGTAGAATTTCCTATAAGGCAGGAATTAAATCAGGACCTGATGTTGATAGAAATGAAATCACCAATTTGCTTGTGAGTGTCGCGATGATGCAATCTAGGGTTATTGTTGTTCATACACATTCTAATTCTGGATTTATGATCTTCAAAGTTGCGCGATATCTTGGGATGATGGAGGAGGGTTATGTCTGGATAGCCACAGATTGGCTTTCCACTGTTATAGATTCCGCGTCTCTTCATTCGGAGACAATGGATACTCTGCAGGGTGCGCTTGTTTTGCGCCAGCATACGCCTGATACTGATAGGAAGAAAGCGTTTTTATCCAGGTGGAACAAGTTAACCGGTGGTTCCTTGGGGCTAAATTCTTACGGTTTCCACGCTTATGATTCTGTTTGGCTCGTTGCACAAGCTATTGATAAATTTTTCAGTCAGGGTGGGGTCGTTTCGTGTACGAATTACACAAGTTTGCATGATGATAATGGAAAGGGAGGTGGTCTTAACCTTGATGCCATGAGCATATTTGACAATGGAACACTTCTGTTGAACAACATATTGAAGACTGATTTTGTTGGATTATCAGGTCCATTGAAATTTGATTCAGAAAAATCTGCTTATCGTCCTGCGTATGACATCATTAATGTTGTCGGAAATGGCGTTCGTCGAGTTGGCTACTGGTCTAACTATTCTGGTCTGTCAATTGTATCTCCTGAAACGTTGTATGCCAACCCACCTAATAGATCAAATGCAAACCAGCACCTTCACACTGTGATATGGCCCGGAGAAACTTTATCCAGGCCCCGTGGATGGGTCTTCCCAAACAATGGCAAACAATTGAGAATTGGTGTGCCTATTAGAGCCAGTTTCCGTGAATTTGTGTCACCGGTGAAGGGAACTGATAACTTTAAAGGGTTTTGCATTGATGTATTTATAGCAGCTGTAAACTTGTTACCATATGCCGTTCCTTATCGATTTGTGCCATTCGGAGATGGCCTAAAAAATCCAAGCTACACAGAACTTGTCAACTCAATAACCGCTGGTGTTCTTGATGGTGCTATTGGTGACATTGCTATTGTCACAAATCGGACAAGGATTGTAGATTTTACACAGCCATATGCTGCATCTGGACTTGTTGTGGTTGCCCCTTTTAAGAAGATCAATTCTGGCGGTTGGTCTTTCCTGCAGCCGTTCACTCCTTTTATGTGGATTGTGACTGCTTGTTTCTTCTTTTTCGTCGGGATAGTTGTATGGATTCTGGAACACAGAATAAATGACGAGTTTAGGGGTCCACCTAAACAACAAATTATAACCATATTATGGTTTAGCTTGTCGACTCTATTTTTTTCCCACAGAGAGAATACAATGAGTACTCTTGGTCGTGGTGTGGTACTCATATGGTTGTTTGTGGTTTTGATCATTAATTCCAGCTACACTGCAAGTTTAACATCCATACTCACAGTGCAGCAGTTATCTTCATCTATCACTGGAATAGATAGTTTAAAAGCTAGTGATGAACCTATAGGGTTCCAAGTTGGTTCATTTGCGGAACGTTACTTGACTGAAGATCTTGGAATATCAAAATCTAGACTTGTTCCCCTTGGTTCGCCAGAAGAATATGCCAAGTCACTCCAACTTGGTCCTAATAATAAAGGAGGTGTCGCTGCTATTATAGATGAACGACCCTATGTCGAAATATTCTTATCAACTCAATGCACATACAGGATTGTAGGTCAGGAGTTCACCAGAAGTGGGTGGGGTTTTGCATTCCCTCGGGACTCTCCGTTGGCGGTGGATTTATCAACTGCTATTCTTCAACTTTCAGAAAGTGGTGATCTGCAGCGGATTCATGATAAGTGGATGACACGAAGCACCTGTAGTTTAGACAATACCGAAATAGAGTCGGATCGACTTCAGCTCAAAAGCTTTTGGGGTCTATTCATCATTTGTGGAATGGCTTGCTTTATTGCTCTTGTGATACATTTTTTGCAGATTTTGTTACAGTTAAGGCATTCAGGTCCTTCTGAATCAGCTTCTAATGTTGGCCCAATTCAAAGATTTCTTTCACTCATTGATGAGAAGGAAAGTCCATCAAGGAGTGAAAGAAGAAAGAGGAATGGAGATGAAATATCAGCTGAAGATCAGCTTGGAAGACAATCAAAGAGGATACAAAGAGTAACAGCAGCATAG 2793 0.4082 MNLFYYYWVLVLVVVVLPYYFGVKGVYSNSTTISNVSFSRPSVVNIGAIFTFDSSIGKVAKLAMEQAVIDVNSNSSILHSTQLVLHMQTSNCSGFDGMIQALRFMETDVIAILGPQSSVVSHIVSHVANELRVPMLSFAATDPTLSSLQFPFFVRTTLSDSYQMTAVSEIIDFYGWKEVIAIYVDDDYGRNGVSALDDALAGRRCRISYKAGIKSGPDVDRNEITNLLVSVAMMQSRVIVVHTHSNSGFMIFKVARYLGMMEEGYVWIATDWLSTVIDSASLHSETMDTLQGALVLRQHTPDTDRKKAFLSRWNKLTGGSLGLNSYGFHAYDSVWLVAQAIDKFFSQGGVVSCTNYTSLHDDNGKGGGLNLDAMSIFDNGTLLLNNILKTDFVGLSGPLKFDSEKSAYRPAYDIINVVGNGVRRVGYWSNYSGLSIVSPETLYANPPNRSNANQHLHTVIWPGETLSRPRGWVFPNNGKQLRIGVPIRASFREFVSPVKGTDNFKGFCIDVFIAAVNLLPYAVPYRFVPFGDGLKNPSYTELVNSITAGVLDGAIGDIAIVTNRTRIVDFTQPYAASGLVVVAPFKKINSGGWSFLQPFTPFMWIVTACFFFFVGIVVWILEHRINDEFRGPPKQQIITILWFSLSTLFFSHRENTMSTLGRGVVLIWLFVVLIINSSYTASLTSILTVQQLSSSITGIDSLKASDEPIGFQVGSFAERYLTEDLGISKSRLVPLGSPEEYAKSLQLGPNNKGGVAAIIDERPYVEIFLSTQCTYRIVGQEFTRSGWGFAFPRDSPLAVDLSTAILQLSESGDLQRIHDKWMTRSTCSLDNTEIESDRLQLKSFWGLFIICGMACFIALVIHFLQILLQLRHSGPSESASNVGPIQRFLSLIDEKESPSRSERRKRNGDEISAEDQLGRQSKRIQRVTAA 930
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05810 930 Gene3D - 476 590 - -
Trre5g05810 930 FunFam Glutamate receptor 592 722 - -
Trre5g05810 930 MobiDBLite consensus disorder prediction 893 921 - -
Trre5g05810 930 FunFam Glutamate receptor 476 591 - -
Trre5g05810 930 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 57 73 - -
Trre5g05810 930 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 330 342 - -
Trre5g05810 930 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 117 145 - -
Trre5g05810 930 FunFam Glutamate receptor 718 826 - -
Trre5g05810 930 Pfam Receptor family ligand binding region 61 419 IPR001828 -
Trre5g05810 930 PRINTS Metabotropic glutamate GPCR signature 112 138 IPR000337 GO:0004930|GO:0007186|GO:0016020
Trre5g05810 930 PRINTS Metabotropic glutamate GPCR signature 163 179 IPR000337 GO:0004930|GO:0007186|GO:0016020
Trre5g05810 930 PRINTS Metabotropic glutamate GPCR signature 179 196 IPR000337 GO:0004930|GO:0007186|GO:0016020
Trre5g05810 930 PRINTS Metabotropic glutamate GPCR signature 144 163 IPR000337 GO:0004930|GO:0007186|GO:0016020
Trre5g05810 930 PIRSF IGluLR_plant 5 929 IPR017103 -
Trre5g05810 930 Gene3D - 62 409 - -
Trre5g05810 930 SMART GluR_14 482 824 IPR001320 GO:0015276|GO:0016020
Trre5g05810 930 CDD GluR_Plant 479 821 - -
Trre5g05810 930 Gene3D - 159 434 - -
Trre5g05810 930 FunFam Glutamate receptor 159 312 - -
Trre5g05810 930 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 44 882 IPR015683 -
Trre5g05810 930 Pfam Bacterial extracellular solute-binding proteins, family 3 501 823 IPR001638 -
Trre5g05810 930 CDD PBP1_GABAb_receptor_plant 45 437 IPR044440 -
Trre5g05810 930 Gene3D - 591 717 - -
Trre5g05810 930 SUPERFAMILY Periplasmic binding protein-like II 457 824 - -
Trre5g05810 930 MobiDBLite consensus disorder prediction 893 930 - -
Trre5g05810 930 Pfam Ligand-gated ion channel 824 855 IPR001320 GO:0015276|GO:0016020
Trre5g05810 930 SUPERFAMILY Periplasmic binding protein-like I 38 473 IPR028082 -
Trre5g05810 930 Gene3D - 775 829 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05810 Trre-Chr5 57882900 57886544 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05810 39 909 Ion Channels AT1G42540 64.068 0.0 1209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05810 K05387 - gmx:102661260 1433.31