Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05808 ATGTATGATTTTGAAGAGATTGTTATGCCTTTGGATATGGAATTTTCTACTCCAATTACAATATTAGAAGGTGATGATTACAACAAAGACAATGTTTTTAAGGTTATTCATGATGATAATAATGATGATGATAAATTAGAGGATTTCAATAATCTAAAACCAACCACAATTGGTAAGCCTCCAAGGCATGCATCAAGTTTGAGACACAGCCTTAGCTCCACCAGATTGATGGTGGCTTCATCAGATTTGACTGCGGATGCTGAGGTTACTGGGAGTAAATCATCTTCTGAAGACAAGACGGAGTTTGTACCCATATTTAGGTCGGGAAGTTGTGCTGAAAGAGGACCTAAACAATATATGGAAGATGAACACATATGTATCGATGATCTTAATCAACACATAGGTTCTCCTTCCAATATTCCTTTTCCTGGAGCTTTCTATGGGGTGTTTGATGGTCACGGAGGAACAGACGCTGCGTTGTTTGTAAGAAATAACCTTCTTAGACTCATTGTTGAGGACTCGCAGTTTCCAACTTGTGTGGGGAAGGCGATTACAAGTGCATTTATGAAAGCCGATTATGCATTTGCAGATTCCAGTTCGCTTGATATCTCCTCTGGCACCACTGCTTTAACTGCTCTTGTATTTGGGAGGACCATGATAATTGCAAATGCGGGGGATTGTCGAGCTGTACTAGGGAGACGAGGTAGAGCAATTGAAATGTCAAGAGACCAGAAACCAAATTGCACTTCTGAAAGGCTAAGGATTGAAAAACTTGGTGGAGTGGTATATGATGGATACTTGAATGGCCAATTATCTGTTTCACGTGCCTTAGGAGACTGGCACATGAAGGGTCCCAAGGGTTCTGCTTGCCCTTTGAGTTCCGAGCCAGAGTTGCAGGAAACCTTATTGTCCGAGGATGATGAATTCTTGATTATGGGTTGTGATGGCCTGTGGGATGTAATGAGTAACCAATGTGCCGTGACCATGGCAAGAAAAGAGTTGATGATACATAATGATCCTCAAAGGTGTTCAAGAGAGTTGGTCAGAGAGGCTCTTAAGCGTAACTCGTGTGATAATTTAACAGTTATTGTGGTATGTTTCTCACCGGATCCTCCTCCTAGGATAGAGATACCTCCTTCTCGAGTCAGGAGGAGTATATCAGCAGAAAGCCTCACTTTACTTAAGGGTGTATTAGAGTGTTAG 1203 0.4165 MYDFEEIVMPLDMEFSTPITILEGDDYNKDNVFKVIHDDNNDDDKLEDFNNLKPTTIGKPPRHASSLRHSLSSTRLMVASSDLTADAEVTGSKSSSEDKTEFVPIFRSGSCAERGPKQYMEDEHICIDDLNQHIGSPSNIPFPGAFYGVFDGHGGTDAALFVRNNLLRLIVEDSQFPTCVGKAITSAFMKADYAFADSSSLDISSGTTALTALVFGRTMIIANAGDCRAVLGRRGRAIEMSRDQKPNCTSERLRIEKLGGVVYDGYLNGQLSVSRALGDWHMKGPKGSACPLSSEPELQETLLSEDDEFLIMGCDGLWDVMSNQCAVTMARKELMIHNDPQRCSRELVREALKRNSCDNLTVIVVCFSPDPPPRIEIPPSRVRRSISAESLTLLKGVLEC 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05808 400 CDD PP2Cc 106 367 IPR001932 -
Trre5g05808 400 ProSitePatterns PPM-type phosphatase domain signature. 146 154 IPR000222 GO:0043169
Trre5g05808 400 PANTHER PROTEIN PHOSPHATASE 2C 93 365 IPR015655 GO:0004722|GO:0006470
Trre5g05808 400 SMART PP2C_4 97 365 IPR001932 -
Trre5g05808 400 FunFam Probable protein phosphatase 2C 22 91 370 - -
Trre5g05808 400 SUPERFAMILY PP2C-like 102 368 IPR036457 -
Trre5g05808 400 Gene3D - 84 370 IPR036457 -
Trre5g05808 400 ProSiteProfiles PPM-type phosphatase domain profile. 107 367 IPR001932 -
Trre5g05808 400 Pfam Protein phosphatase 2C 108 359 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05808 Trre-Chr5 57863810 57866116 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05808 11 399 PP2C-type Phosphatase Gene Family AT2G33700 71.611 0.0 561
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05808 K14803 - gmx:100778015 616.305