Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05804 ATGTTTGAGAGGATGCATATTGAACCTATTTATGATGCTTTTGTATGTCCTTTGACGAAGCAAGTTATGCGCGATCCTGTTACTTCTGAAAACGGGCAGACTTTTGAACGTGAAGCAATTGAAAAATGGTTCAAGGAATGCAGGGAGAGTGGACGGAAACTGGTTTGTCCCTTGACTCTGCGAGAGTTAAAAAGTGCCGAATTGAATCCTAGTATGGCTTTGCGGAACACCATTGAAGAGTGGACTGCCAGAAATGAAGCTGCACAGCTGGATATGGCTCGGCGTTCATTGAATACGGGGAGTCCAGAAAAGGAAAACCTTCAGGCTTTGAGGTATGTCCAGCACATCTGTCAAAGAAGTCGGTCGAATAAACATGTTGTCCGCAGTGCAGGGCTTATACCAATGATTGTTGATATGCTCAAGAGTGGCAGCCGCAAAGTTCGTTGTAGAGCTCTTGAAACCCTTAGAATTGTGGTAGAAGGAGACGATGAAAATAAGGAACTGTTGGCTGAAGGGGACACTGTGCGTACTGTAGTAAAATTTCTTTCTCACGAGCTTTCTAAAGAAAGAGAAGAGGCTGTCTCCTTGCTTTATGAACTGTCAAAGTCAGAAACCCTTTGTGAGAAGATTGGTTCAATCAATGGATCTATTCTTATATTAGTTGGAATGACAAGCAGCAAATCAGAAGACCTTTCCACTGTTGAGAAGGCTGATAAAACATTAGAGAATCTGGAAAAATACGAGAATAATGTGCGGCAGATGGCTGAAAATGGTAGATTGCAGCCTCTTCTAAACCATCTTCTTGAAGGTCCACCAGAAACCAAACTGTCCATGGCTGGAATCCTTGGTGAGCTGGTTTTGGACAATGATGTTAAAGTCCTTGTTGCTAGAACTGTGGGCTCATCTCTGATCAATATCATGAAAAGTGGCAATATGCAGTCAAGAGAAGCTGCACTGAAAGCACTAAATCAGATATCATCATGTGAGCCAAGCGCAAAGGTTTTAATAGAAGCTGGAATACTTTCCCCTCTTGTCAATGACCTTTTTGCAGTGGGCCCTAATCTGCTGCCTACTCGACTAAAAGAGGTCTCTGCTACAATTCTCGCCAGTGTTGTGAATTCAGGAGAAGACTTTGATTCAATTCCACTTGGACCTGATCACCAAACTCTGGTCTCGGAGGATATAGTCCATAAGCTACTACATCTTATTAGCAACACTGGTCCAGCAATTGAGTGCAAACTTCTCCAAGTTCTTGTTGGACTTGCTAGTTCTCCAACTACAGTGCTGAGTCTTGTTTCTGCTATCAAAAGCTCTGGTGCCACTATCAGTCTAGTTCAGTTCATCGAGGCACCACAGAAAGATCTGCGTTTAGCTTCCATAAAACTTCTTCAGAATTTGTCTCCCCACATGGGCCCGGAATTAGCCGATGCGCTTCGTGGCTCAGTGGGACAGCTTAGTAGTCTAGTTAAAGTCATATCAGAAAATATCGGAATCACTGAAGAGCAGGCAGCTGCTGTTGGCCTCTTAGCTGATCTACCGGAGAGAGATTTAGGCCTCACGAGACAGCTTCTAGACGAAGGTGCCTTTCGGATGGCCATATCGAAGGTGATTGCTATCAGGCAGGGAGAGATCAGAGGCACTCGGTTCGTGACACCATTTCTTGAAGGGCTTATGAAGATTGTTGCAAGGGTTACATATGTTTTGGCCGATGAGCCTGATGCCGTTGCACTTTGCCGTGATCAAAATCTTGCTGCACTCTTCATTGAACTGCTACAGACCAATGGACTTGATAATGTACAGATGGTTTCTGCTATAGCTTTGGAGAATTTATCCCTAGAATCAAAGAATTTAACCAAATTGCCCGAGGTGCCAGAACCGACCTTTTGTGCTTCATTCTTCTTGTGTTTCAGTCCACCGCCAGTCGTTACTGGGTTATGTAGGATCCACCGTGGGAAGTGTTCTTTAAAAGAAACATTTTGTCTTTACGAAGGACAGGCGGTCCTTAAGTTAGTAGCTCTACTGGACCACACAAATGTGAATGTGGTTGAGGCAGCACTTGCAGCCTTATGTACTGTAATAGATGATGGAGTAGATATTGAGCAAGGTGTACTGGTTTTGTGTGAAGCAGAGGGAGTGAAGCCTATACTTGACGTGTTACTCGAGAAACGAACAGACAATTTGAGGAGAAGGGCAGTTTGGGCAGTGGAGAGATTGTTGCGAACGGACGAGATAGCCTACGAAGTTTCTGGAGATCAAAATGTGAGTACTGCACTTGTGGACGCTTTCCAACACGGTGATTATCGAACTAGGCAGATTGCTGAGCGTGCCCTCAAGCATGTTGATAAGATACCTAACTTCTCAGGAATCTTTCCAAACATGGGATGA 2385 0.4428 MFERMHIEPIYDAFVCPLTKQVMRDPVTSENGQTFEREAIEKWFKECRESGRKLVCPLTLRELKSAELNPSMALRNTIEEWTARNEAAQLDMARRSLNTGSPEKENLQALRYVQHICQRSRSNKHVVRSAGLIPMIVDMLKSGSRKVRCRALETLRIVVEGDDENKELLAEGDTVRTVVKFLSHELSKEREEAVSLLYELSKSETLCEKIGSINGSILILVGMTSSKSEDLSTVEKADKTLENLEKYENNVRQMAENGRLQPLLNHLLEGPPETKLSMAGILGELVLDNDVKVLVARTVGSSLINIMKSGNMQSREAALKALNQISSCEPSAKVLIEAGILSPLVNDLFAVGPNLLPTRLKEVSATILASVVNSGEDFDSIPLGPDHQTLVSEDIVHKLLHLISNTGPAIECKLLQVLVGLASSPTTVLSLVSAIKSSGATISLVQFIEAPQKDLRLASIKLLQNLSPHMGPELADALRGSVGQLSSLVKVISENIGITEEQAAAVGLLADLPERDLGLTRQLLDEGAFRMAISKVIAIRQGEIRGTRFVTPFLEGLMKIVARVTYVLADEPDAVALCRDQNLAALFIELLQTNGLDNVQMVSAIALENLSLESKNLTKLPEVPEPTFCASFFLCFSPPPVVTGLCRIHRGKCSLKETFCLYEGQAVLKLVALLDHTNVNVVEAALAALCTVIDDGVDIEQGVLVLCEAEGVKPILDVLLEKRTDNLRRRAVWAVERLLRTDEIAYEVSGDQNVSTALVDAFQHGDYRTRQIAERALKHVDKIPNFSGIFPNMG 794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05804 794 Gene3D - 555 784 IPR011989 -
Trre5g05804 794 Pfam U-box domain 12 86 IPR003613 GO:0004842|GO:0016567
Trre5g05804 794 Gene3D - 299 467 IPR011989 -
Trre5g05804 794 SUPERFAMILY ARM repeat 103 513 IPR016024 -
Trre5g05804 794 SUPERFAMILY RING/U-box 5 91 - -
Trre5g05804 794 ProSiteProfiles U-box domain profile. 9 88 IPR003613 GO:0004842|GO:0016567
Trre5g05804 794 SUPERFAMILY ARM repeat 391 782 IPR016024 -
Trre5g05804 794 Gene3D - 97 298 IPR011989 -
Trre5g05804 794 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 3 790 - -
Trre5g05804 794 SMART Ubox_2 13 81 IPR003613 GO:0004842|GO:0016567
Trre5g05804 794 CDD RING-Ubox_PUB 11 68 IPR045210 -
Trre5g05804 794 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 96 IPR013083 -
Trre5g05804 794 SMART arm_5 698 740 IPR000225 GO:0005515
Trre5g05804 794 SMART arm_5 162 202 IPR000225 GO:0005515
Trre5g05804 794 SMART arm_5 328 373 IPR000225 GO:0005515
Trre5g05804 794 SMART arm_5 571 612 IPR000225 GO:0005515
Trre5g05804 794 SMART arm_5 246 287 IPR000225 GO:0005515
Trre5g05804 794 SMART arm_5 653 694 IPR000225 GO:0005515
Trre5g05804 794 SMART arm_5 120 160 IPR000225 GO:0005515
Trre5g05804 794 SMART arm_5 288 327 IPR000225 GO:0005515
Trre5g05804 794 Coils Coil 237 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05804 Trre-Chr5 57830854 57834513 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05804 7 794 U-box Gene Family AT1G76390 65.949 0.0 1019
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05804 - - gmx:100789746 1373.99