Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05801 ATGGAAGAAGATTGGAAACCAAAGTTGGAAATGATGTTTGATAGCATTGAAGATGCTTGGAAATTTTGGGGTGATTATGGCGGAAAAGTTGGATTTAGCGTGAGGAAACAATATTCAAACACGAACAAACATGGCATAATTACTTCTTTTAGGTTTGTTTGTTGTAAAGAAGGTTTGAGAAAACCAGATAAACGAGATTATAAAACAGTTAATCCAAGGCCGGAGACCAGGACAAATTGTCAAGCAAGGTTGGGCATCAAAAATATGGGTGGAAGATTTATGGTGGTTGATTTTGTGGAGGAACATAACCACGATTTACAACTACCAGAAACAACTCATATGTTGCCATCTCAAAGAAAAATCTCTCAAATTCAATGTCAACAAATTGATCTAGTTGATGATGCTGGACTACAACAAAGAAATTCATTTAGCTTGATGAGTAAAGAAGTGGGAGGAAGAACTAACTTGGGATTTACCCGCCTTGATCAAAAGAACTATCTCCGAAAAAAGAGGGAGAGGAGTATGGAACACGGGGACGTTGGTTATTTATTGCAATACTTCCAAAAAAAATTGGTGGAAAATCCAACTTTCTATCATGCATATCAAATGGATGATGAAGATCAAATCACCAATGTGTTTTGGGCAGATGCAAGTATGCTCATTGATTATGAGTGTTTTGGTGATGTGATTTCTCTTGATGCAACATATTGCACAAATAGTTCAAATAGACCGCTTGCAATTTTCTCTGGATTTAACCACCATCGAAAAGCTGTGATTTTTGGGGCTGCATTGTTGTATGATGAAACAACAGATTCATACAAGTGGCTCTTTGAGACATTTTTAGAGGCTCATAAGCAGAAAATGCCTCAAACAGTTTTTACTGATCAAGCCCAAGCAATGGCAAAAGCGTTAGGCGAGGTTATGCCTGGAGCTTACCATGGCTTATGTACGTGGCACTTGATGCAAAATGCCATCAAACACTTAGGCAATTTAATGAAAGGTGGAACTTGTTTTCTTAGTGATTTGAGTAAGTGCATGCATGGTTATGAAAATGAAGAACAATTTGAAGAAGGCTGGAGTACTCTCCTTGTGAAGTATGATGCAAAGGAAAGTGATTGGTTACAAAGATTATACACTTTAAAGGAGAAATGGGCATCATGTTACATGAATAAAGTTTTCACATTAGGAATGCGAAGTACTCAACTTAGTGAAAGTGTGAATGCAGATATTAAAAGTTTTATGGATGCGAAGTTGGATATTATCAAATTCTTTAAGCGCTTTGAGGATGTTGTAGAACAAAAGCGGCATAACGAATTGAAGTGTGAATATGAAGCACGTCAAAAGATTCCAAGGCTAAAGAACTCATATTCAAGTATCTTGCAGCAAATGTCTAAGGTTTATACTCCCACTATTTTTGATAATTTTCAACATGAGTATGAGTTATTTGAAGCATGCTCTGTCAAAAGCATTAACATACAATCACCCTTAGTTGATTGTGTTATTGCCATGGAAAGTGATTTGGAAGAGTGGAGAGTGTCATTTGATTTGGATAAGAATTCCATTTCTTGCTCTTGTCACAAGTTTGAGAGTTTTGGCATACTTTGTTGTCATTGTCTACGATTATTTATTCATATAAATGTTAAATCAGTGCCTGAACAATATATCTTAAAAAGGTGGACAGAGTTAGCAAGAGGTGAGACTTTATCTAATGTTGGTGTTAGTAATGTGGTAGAAGATGTTGATCTATCACCAACACAACGGTACAACGTGATTTGCCCCCGCCTTATTAGGATAGCCACTGAAGCATGTAGAAGTCCAGAAACATTCAATCTCCTTTGTAAAGTTGCTAATGAATTGAATAGGCACATGCTGGAGTTTCAAAACAATCCAACAAGTATTAGTCAAGTGAATGAGTTTATTGCTAAAGTTAAAGAGATTGGAAGTAGCAATGGTGGTTCTTCACAAGCAAAAGGCCTCAAAAAAAGAGAAGGCAGAAGGGGTACAAAACGTTTAAAAGGTTGGCCAGAGCGTGAACTTTCCAAAAGCAAGAAAAAAGGTGGATCGAAAGCTTCAAAAGTTCAGAACAATAAAAAACAGACACAAGACCAACTCATCAAAACAGGAAATAATTGTGATGAAGGTGATTCACAAAGTCAAGTCCAAAATGAGGTTCCTAATACAGTTGCACATATTGGCCTCAATGATGCAAACAGTGTCCCATCCATGGAAACCCTTGATGAGTATGTCACCACATTGACCAATTCATAA 2268 0.3686 MEEDWKPKLEMMFDSIEDAWKFWGDYGGKVGFSVRKQYSNTNKHGIITSFRFVCCKEGLRKPDKRDYKTVNPRPETRTNCQARLGIKNMGGRFMVVDFVEEHNHDLQLPETTHMLPSQRKISQIQCQQIDLVDDAGLQQRNSFSLMSKEVGGRTNLGFTRLDQKNYLRKKRERSMEHGDVGYLLQYFQKKLVENPTFYHAYQMDDEDQITNVFWADASMLIDYECFGDVISLDATYCTNSSNRPLAIFSGFNHHRKAVIFGAALLYDETTDSYKWLFETFLEAHKQKMPQTVFTDQAQAMAKALGEVMPGAYHGLCTWHLMQNAIKHLGNLMKGGTCFLSDLSKCMHGYENEEQFEEGWSTLLVKYDAKESDWLQRLYTLKEKWASCYMNKVFTLGMRSTQLSESVNADIKSFMDAKLDIIKFFKRFEDVVEQKRHNELKCEYEARQKIPRLKNSYSSILQQMSKVYTPTIFDNFQHEYELFEACSVKSINIQSPLVDCVIAMESDLEEWRVSFDLDKNSISCSCHKFESFGILCCHCLRLFIHINVKSVPEQYILKRWTELARGETLSNVGVSNVVEDVDLSPTQRYNVICPRLIRIATEACRSPETFNLLCKVANELNRHMLEFQNNPTSISQVNEFIAKVKEIGSSNGGSSQAKGLKKREGRRGTKRLKGWPERELSKSKKKGGSKASKVQNNKKQTQDQLIKTGNNCDEGDSQSQVQNEVPNTVAHIGLNDANSVPSMETLDEYVTTLTNS 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05801 755 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 4 621 IPR031052 GO:0006355
Trre5g05801 755 MobiDBLite consensus disorder prediction 647 724 - -
Trre5g05801 755 Pfam SWIM zinc finger 511 546 IPR007527 GO:0008270
Trre5g05801 755 SMART 26again6 521 548 IPR006564 GO:0008270
Trre5g05801 755 Pfam MULE transposase domain 229 323 IPR018289 -
Trre5g05801 755 ProSiteProfiles Zinc finger SWIM-type profile. 510 546 IPR007527 GO:0008270
Trre5g05801 755 MobiDBLite consensus disorder prediction 669 685 - -
Trre5g05801 755 Pfam FAR1 DNA-binding domain 21 107 IPR004330 -
Trre5g05801 755 MobiDBLite consensus disorder prediction 692 724 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05801 Trre-Chr5 57814997 57817524 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Trre5g05801 MULE 1.3e-25 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05801 - - mtr:112419426 1036.17