Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05792 ATGGAAACAGAGAACGATAATTCCTCAAAATCAAATGGTATTATTATTGGAGGAGGAAGCAACCTTTATGTGAAAGTGATGACCGATGAACAATTGGAACTTCTCAGACAACAAATTTCTGTTTACATTACCATTTCTGACCAGCTTGTTCAGATGCACAAATCCATCACCACTCAACATGACCTTTCTGGACTAAGGTTGGGTAATCTGTACTGTGATCCACTGATGGCATGCTCTGGACACAAGATAACTTCTAGGCAGCGTTGGACACCAACGCCTATACAGCTTCAAATACTCGAGCGGATTTTCGATGAAGGCACTGGAACTCCCTCCAAACAGAAGATCAAAGATATAACCAATGAACTCGGGCAACACGGCCAAATATCTGAGACTAATGTTTATAATTGGTTCCAGAATAGAAGAGCTCGTTCAAAGCGCAAGCAATCGGCTCCTACAACAAATCAATCAGGAGAACCAGAGCCCGAGACAGAAGTTGAGTCTCCAAAAGAAAACAAAACACACGAAGAATGTGATCATGTTCAATTCTTTGAGAATTTATCACCTCATAGTATCAAGGATATGTACATTCAAAGTCCTGACATAGGATTTGAGCACTTGTTGAGTAAAATTGAAGTTTCAGGCTCCTATAGTTCTTATTTTCTTTGA 666 0.3994 METENDNSSKSNGIIIGGGSNLYVKVMTDEQLELLRQQISVYITISDQLVQMHKSITTQHDLSGLRLGNLYCDPLMACSGHKITSRQRWTPTPIQLQILERIFDEGTGTPSKQKIKDITNELGQHGQISETNVYNWFQNRRARSKRKQSAPTTNQSGEPEPETEVESPKENKTHEECDHVQFFENLSPHSIKDMYIQSPDIGFEHLLSKIEVSGSYSSYFL 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05792 221 SMART HOX_1 84 151 IPR001356 GO:0003677
Trre5g05792 221 Pfam Homeodomain 86 146 IPR001356 GO:0003677
Trre5g05792 221 CDD homeodomain 86 148 IPR001356 GO:0003677
Trre5g05792 221 MobiDBLite consensus disorder prediction 141 174 - -
Trre5g05792 221 SUPERFAMILY Homeodomain-like 85 149 IPR009057 -
Trre5g05792 221 Gene3D - 87 153 - -
Trre5g05792 221 PANTHER WUSCHEL-RELATED HOMEOBOX 13 14 206 IPR044559 GO:0003700
Trre5g05792 221 ProSiteProfiles 'Homeobox' domain profile. 82 147 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05792 Trre-Chr5 57776656 57777734 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05792 22 173 Wox Gene Family AT4G35550 68.182 1.20e-69 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Trre5g05792 Homeodomain 4.8e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05792 - - var:108342525 321.627