Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05789 ATGAAAGGAGGAAAGTCCAAGGGTGAATCGAAGAAAGCTGAGACTAAGCTTGCTGTGAATAAGAAGGGTGCTCCCGCTACTAAGGGCGGAAGGAAACCAGCCAAGGGAAAGGAACCAAAAGACCCTAACAAGCCAAAGAGGCCTGCAAGTGCTTTCTTCATTTTCATGGAGGAGTTTAGGAAGCAGTTTAACAAGGAAAATCCCGACAACAGAGCTGTGTCTGCTGTGGGCAAAGCTGCTGGAGCAAAATGGAAGTCATTGTCTGAAGCTGAGAAAGCACCATATGCTGCAAAAGCTGAAAAAAGAAAGGCTGAATATGAGAAGGTCATTAGGGCCTATAACAAGAAACAGGCTGAAGGTCCAGCTGCTGCTGATGAAGAGGAATCTGAGAAATCAGAATCTGAGGTGCATGATGAGAATGATGACGATGAGGATGGTAGTGACGAGGAGGATGATGACGAGTAG 465 0.4624 MKGGKSKGESKKAETKLAVNKKGAPATKGGRKPAKGKEPKDPNKPKRPASAFFIFMEEFRKQFNKENPDNRAVSAVGKAAGAKWKSLSEAEKAPYAAKAEKRKAEYEKVIRAYNKKQAEGPAAADEEESEKSESEVHDENDDDEDGSDEEDDDE 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05789 154 MobiDBLite consensus disorder prediction 81 154 - -
Trre5g05789 154 SUPERFAMILY HMG-box 36 118 IPR036910 -
Trre5g05789 154 CDD HMG-box_AtHMGB1-like 46 106 - -
Trre5g05789 154 Coils Coil 96 116 - -
Trre5g05789 154 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 1 149 IPR031061 -
Trre5g05789 154 Gene3D High mobility group box domain 29 127 IPR036910 -
Trre5g05789 154 MobiDBLite consensus disorder prediction 1 51 - -
Trre5g05789 154 SMART hmgende2 44 115 IPR009071 -
Trre5g05789 154 MobiDBLite consensus disorder prediction 31 45 - -
Trre5g05789 154 MobiDBLite consensus disorder prediction 128 154 - -
Trre5g05789 154 MobiDBLite consensus disorder prediction 94 127 - -
Trre5g05789 154 MobiDBLite consensus disorder prediction 1 18 - -
Trre5g05789 154 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 45 114 IPR009071 -
Trre5g05789 154 Pfam HMG (high mobility group) box 45 114 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05789 Trre-Chr5 57763067 57764414 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Trre5g05789 HMG_box 5.6e-23 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05789 K25507 - lang:109352139 167.933