Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05784 ATGGGAAACTGTTTCACAAATTCAGGCGTTGACAATAAGACTACTAATTCAACTGTCTATAAACAACACAACACTACTTCTGCAGGTGCAGATGATGAGAGAAGTACGGTTGGAGCGAAAATCGCGACAGTGGAGAAGGAAAGAGGCAGGGAGAGCGCGGTTGGAAAAATTGTGACGCCGAATCTTAAAATGTTTACATTGGATGAGTTGAAAAGTGCGACAAGAAACTTCAGACCAGACACGGTGCTCGGTGAAGGTGGTTTTGGGCGCGTTTTCAAAGGATGGATCGATGAAAATACTTTAAAACCATCCAAAGTTGGTGTTGGAATTCCGGTCGCTGTCAAGAAGTCAAACGCCGATAGTCTCCAAGGTTTACAAGAATGGCAGTCTGAAGTGAAATTTTTAGGGAAATTCTCTCATCCAAATCTTGTTAAACTACTTGGCTACTGCTGGGAGGAAAATCAATTCCTGTTAGTCTACGAATGCATGCAAAAGGGCAGCTTGGAAAGTCATCTTTTCAGAAGTCCTGAACCACTTTCTTGGGAAATAAGGTTGAAGATAGCCATAGGAGCTGCCAAAGGTCTGGCTTTTTTGCACACTTCAGAAAAGTCTGTTATTTATAGAGACTTCAAGTCCTCCAACATTTTGCTTGATGGGGACTTTAATGCAAAGTTGTCTGATTTTGGATTGGCCAAGCTTGGGCCTGTAAATGGTAGATCACATGTAACCACAAGAATCATGGGGACATATGGTTATGCAGCTCCTGAGTACATGGCTACAGGTCATCTGTATGTGAAAAGTGATGTGTATGGATTTGGTGTTGTGCTTCTAGAAATCACTATAATAGATAGTTTGGATGGAAAACCAGAGGTTTTGCTTGACCCCAATGGCTTAAGTGAAGATGGAACTGTATCGTTGAACACATTGTCGGTGAGTGAAGATGCCAAGTATTTGGCTTATGCACTTAGTACCAGTGGTAGCGATTGGACGACTATAAAAGTAAAGCGTATCGAGGATAAGAATGTTGAGCCTGATACTTTATCATGGGTTAAATTTTCCTCCATTAGTTGGACACATGATAACAAAGGTTTCTTTGTCAATCACAATAATAAAGTATATCCTCCTCTATATTGGAGAAGGGTGTGA 1146 0.4119 MGNCFTNSGVDNKTTNSTVYKQHNTTSAGADDERSTVGAKIATVEKERGRESAVGKIVTPNLKMFTLDELKSATRNFRPDTVLGEGGFGRVFKGWIDENTLKPSKVGVGIPVAVKKSNADSLQGLQEWQSEVKFLGKFSHPNLVKLLGYCWEENQFLLVYECMQKGSLESHLFRSPEPLSWEIRLKIAIGAAKGLAFLHTSEKSVIYRDFKSSNILLDGDFNAKLSDFGLAKLGPVNGRSHVTTRIMGTYGYAAPEYMATGHLYVKSDVYGFGVVLLEITIIDSLDGKPEVLLDPNGLSEDGTVSLNTLSVSEDAKYLAYALSTSGSDWTTIKVKRIEDKNVEPDTLSWVKFSSISWTHDNKGFFVNHNNKVYPPLYWRRV 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05784 381 Gene3D Phosphorylase Kinase; domain 1 61 162 - -
Trre5g05784 381 ProSiteProfiles Protein kinase domain profile. 77 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g05784 381 Pfam Prolyl oligopeptidase, N-terminal beta-propeller domain 284 370 IPR023302 GO:0004252
Trre5g05784 381 SUPERFAMILY Protein kinase-like (PK-like) 62 281 IPR011009 -
Trre5g05784 381 Gene3D - 277 373 - -
Trre5g05784 381 FunFam Os07g0541700 protein 163 249 - -
Trre5g05784 381 PANTHER OS01G0588500 PROTEIN-RELATED 28 280 - -
Trre5g05784 381 SUPERFAMILY Peptidase/esterase 'gauge' domain 280 373 - -
Trre5g05784 381 FunFam Serine/threonine-protein kinase BIK1 44 162 - -
Trre5g05784 381 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Trre5g05784 381 ProSitePatterns Protein kinases ATP-binding region signature. 83 116 IPR017441 GO:0005524
Trre5g05784 381 Gene3D Transferase(Phosphotransferase) domain 1 166 276 - -
Trre5g05784 381 Pfam Protein tyrosine and serine/threonine kinase 81 280 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05784 Trre-Chr5 57695949 57700084 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05784 47 290 Glycoside Hydrolase AT3G07070 50.787 1.34e-76 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trre5g05784 PK_Tyr_Ser-Thr 5.5e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05784 - - aprc:113865973 429.869