Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05783 ATGGGAAACTGTTTCACAAATTCAGGCGTTGACAATAAGACTACTAATTCAACTGTCTATAAACAACACAACACTACTTCTGCAGATGATGAGAGAAGTACGGTTGGAGCGAAAATCGCGACAGTGGAGAAGGAAAGAGGCAGGGAGAGCGCGGTTGGAAAAATTGTGACGCCGAATCTTAAAATGTTTACATTGGATGAGTTGAAAAGTGCGACAAGAAACTTCAGACCAGACACGGTGCTCGGTGAAGGTGGTTTTGGGCGCGTTTTCAAAGGATGGATCGATGAAAATACTTTAAAACCATCCAAAGTTGGTGTTGGAATTCCGGTCGCTGTCAAGAAGTCAAACGCCGATAGTCTCCAAGGTTTACAAGAATGGCAGTCTGAAGTGAAATTTTTAGGGAAATTCTCTCATCCAAATCTTGTTAAACTACTTGGCTACTGCTGGGAGGAAAATCAATTCCTGTTAGTCTACGAATGCATGCAAAAGGGCAGCTTGGAAAGTCATCTTTTCAGAAGTCCTGAACCACTTTCTTGGGAAATAAGGTTGAAGATAGCCATAGGAGCTGCCAAAGGTCTGGCTTTTTTGCACACTTCAGAAAAGTCTGTTATTTATAGAGACTTCAAGTCCTCCAACATTTTGCTTGATGGGGACTTTAATGCAAAGTTGTCTGATTTTGGATTGGCCAAGCTTGGGCCTGTAAATGGTAGATCACATGTAACCACAAGAATCATGGGGACATATGGTTATGCAGCTCCTGAGTACATGGCTACAGGTCATCTGTATGTGAAAAGTGATGTGTATGGATTTGGTGTTGTGCTTCTAGAAATCACTATAATAGATAGTTTGGATGGAAAACCAGAGGTTTTGCTTGACCCCAATGGCTTAAGTGAAGATGGAACTGTATCGTTGAACACATTGTCGGTGAGTGAAGATGCCAAGTATTTGGCTTATGCACTTAGTACCAGTGGTAGCGATTGGACGACTATAAAAGTAAAGCGTATCGAGGATAAGAATGTTGAGCCTGATACTTTATCATGGGTTAAATTTTCCTCCATTAGTTGGACACATGATAACAAAGGTTTCTTTGTCAATCACAATAATAAAGTATATCCTCCTCTATATTGGAGAAGGGTGTGA 1140 0.4105 MGNCFTNSGVDNKTTNSTVYKQHNTTSADDERSTVGAKIATVEKERGRESAVGKIVTPNLKMFTLDELKSATRNFRPDTVLGEGGFGRVFKGWIDENTLKPSKVGVGIPVAVKKSNADSLQGLQEWQSEVKFLGKFSHPNLVKLLGYCWEENQFLLVYECMQKGSLESHLFRSPEPLSWEIRLKIAIGAAKGLAFLHTSEKSVIYRDFKSSNILLDGDFNAKLSDFGLAKLGPVNGRSHVTTRIMGTYGYAAPEYMATGHLYVKSDVYGFGVVLLEITIIDSLDGKPEVLLDPNGLSEDGTVSLNTLSVSEDAKYLAYALSTSGSDWTTIKVKRIEDKNVEPDTLSWVKFSSISWTHDNKGFFVNHNNKVYPPLYWRRV 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05783 379 ProSiteProfiles Protein kinase domain profile. 75 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g05783 379 FunFam Serine/threonine-protein kinase BIK1 42 160 - -
Trre5g05783 379 FunFam Os07g0541700 protein 161 247 - -
Trre5g05783 379 ProSitePatterns Protein kinases ATP-binding region signature. 81 114 IPR017441 GO:0005524
Trre5g05783 379 ProSitePatterns Serine/Threonine protein kinases active-site signature. 203 215 IPR008271 GO:0004672|GO:0006468
Trre5g05783 379 SUPERFAMILY Protein kinase-like (PK-like) 60 279 IPR011009 -
Trre5g05783 379 PANTHER OS01G0588500 PROTEIN-RELATED 28 278 - -
Trre5g05783 379 SUPERFAMILY Peptidase/esterase 'gauge' domain 278 371 - -
Trre5g05783 379 Pfam Protein tyrosine and serine/threonine kinase 79 278 IPR001245 GO:0004672|GO:0006468
Trre5g05783 379 Pfam Prolyl oligopeptidase, N-terminal beta-propeller domain 282 368 IPR023302 GO:0004252
Trre5g05783 379 Gene3D Transferase(Phosphotransferase) domain 1 164 274 - -
Trre5g05783 379 Gene3D - 275 371 - -
Trre5g05783 379 Gene3D Phosphorylase Kinase; domain 1 59 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05783 Trre-Chr5 57695949 57700084 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05783 3 288 Glycoside Hydrolase AT3G07070 46.358 1.46e-77 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trre5g05783 PK_Tyr_Ser-Thr 5.4e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05783 - - aprc:113865973 430.639