Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05777 ATGGGAGATGGTGCTGCAGTGACATCATCTGCAACCATGATGGAAGGTCCATCACAAGATGAAAATTCAATGGATTTTGATTACATGAGTGAACTTTTGTTAGATGGTTGTTGGTTGGAAGCTTCTGCTGATGGATCTGAGTTCTTGCTGCAAACTTCTCCTTTTTCCAATCCAATCTTTGACCCTTCATTTTCTTGGCCTTCCTTGGAGAATACCGAGCCACCCCGCAAAGAGGATGGGCATGTTGGTATTGAACAAGAAAGCCAGATTATAGTTAATAATGCTGGTAGTAGTGATCGGCAGCGGTGTGAGTTTGAGGCTCATTTGGGTGAAGGGGTTAGTAGGTTGTGGATTCCACCGACGCCTAATCCAGGACCTGGCGGATCTTTCATAACGGAGAAGCTGATAAGGGCCCTCAAGTGGATCAAAGATTTCAATAGGAACAAAGATATGCTTATACAAATATGGGTGCCGGTGAATAGAGGGGATGATAGGCCAATTCTAAGAGCTAATGATCTTCCTTTTTCACTTGAATCGAGGTCTTTAAACCTTGCAAAGTACCGAGAGATTTCTGTAAGATATCAGTTTTCTGTAGAGGAGGAGGACTCGAAGGAGTTGGTGGCGGGTTTGCCCGGTCGAGTTTATAGAGATAAGATTCCTGAGTGGACGCCTGATGTTCGATTCTTCAGGAGTGAAGAGTATCCGCGAGTTGACCATGCTCAAGAGTGTGATATACACGGAACATTAGCAGTTCCTGTGTTTGAACAAGGGAGCAGGACATGTTTGGGCGTTATTGAAGTGGTGATGACTACACAGCAGAGCAACTATGGCCGTGAACTTGAGACTGTTTGCAAAGCGCTCGAGGTTGTTGATCTCAGAAGCTCTGGACATTCAAGTCTTCAGAATGTGAAGGCGTGCGACAAATCCTATGAAACTGCACTACCTGAGATTCAAGAGGTTTTGAGATCTGCATGTGAAATGCACAAATTACCTTTGGCTCAGACTTGGGTCTCATGCATCCAACAGGGAAAAGACGGGTGCCGGCACTCCGATGATAATTATGCAAACTGTATATCTCCGGTGGAGCATGCGTGCTATGTTGGGGATTCCTCAGTTAAGTTTTTTCACGAGGCTTGCATGGAGCATCACTTGTTAAAAGGTCAAGGTGTTGCCGGGGGCGCTTTCATGACAAACCAACCGTGCTTCTCAGCTGACATAACTTCTTTAAGCAAGACAGATTATCCATTGTCTCATCACGCCAGGTTGTTTGGATTGCGGGCTGCAGTTGCCATACGACTCCGAAGCATCTATAGTACTTCAGATGACTATGTTCTTGAGTTCTTCCTGCCTGTAGATTGCAATGACAGTGAAGAACAGAAAAATATGCTCACATCTTTGTCCATGATTATTCAAAGGGTTTGCCGCAGCTTGCGAGTTATAACAGATAAGGAATTGGATAAAGATAACTTATCATCTAATGAAGTGATGGCTGTTACTGATGGTCGATTTGCTACAAATGCAATTTGGTCGGAATCTCAACACAGTAGGATGGCTGCCTCATTGGGCGGTGAAGAAAATTTTAGTGAAACATTGGGTAAAAGATTCTCGGAACAAAGGAAGCAACACGAAACTCTTACTTTAAAAGGAGATCTTGATTGTGGTAGGGCGCGTTCTCCTTCTGTGGAGGGTACTTTCTTGTCAAGTTTGGGAGTAAATAGAACTGGAGAGAAAAGACGGGCTAAGGCAGAGAAAACTATCACTCTTCAAGTCCTTAGGCAATATTTCGCCGGAAGTCTAAAAGATGCTGCGAAAAATATAGGCGTCTGTACTACAACTCTGAAAAGAATCTGCAGGCAACACGGGATAAAGCGTTGGCCTTCTCGGAAGATAAAAAAGGTAGGTCATTCCTTGCAGAAACTTCAGCTCGTCATTGACTCGGTTCAGGGTGCCTCTGGTTCATTTCAAATTGATTCCTTCTATTCAAAATTCTCTGATCTATCCTCTCCAAGAACCAGCCTAATCTCAACTCTGAATCAAATCGATAATCAAGCCTCATTAAGCACACTGCCAGATCCCGACTCATTGAGCCCAGAAGGTGCATCTAAATCACCCTCATCTTCATGTAGTCAAAGTTCATTTTCAAGCCATTCCTGTTCCATCATGTCAGAGCAACAACACCACAAAGGCAATGCTGCTGCTGCTGCTGGTAACAAAGATCCATCAGTTGATGAAGATTCTGTTAATGTTGTATTGAAGAGAATCAGAAGTGAAGCCGAACTTAAAAGCCTGATTCAAGATAATAAAACAAAGCTCATACCAAGATCACAAAGTCAGGAAACACTAGGTGAAAACCTGAAAACGGAGCATCAGAAATCCTTATTAAAAACCGCTCGCAAAGCATCTCAAAAGGAGGATTCTCATAGAGTAAAAGTTACATTTGGAGACGAGAAAACCCGGTTTAGGTTGCCAAAGAACTGGGGTTATGAAGATCTTGTGCAGGAAATTGCTAGAAGATTTAATGTAAGTGAAATGAGCAAATTCGATATCAAATATTTGGACGATGATTATGAATGGGTATTACTAACTTGTGATGCAGATTTGGAGGAGTGCATTGATGTCAGTCAATCTTCTGAGACTAGTACCATCAAACTTTGTCTGCAACCCTCGAGTAATTTTATCAGGAGTTCTTTAGAATTTAGATAG 2703 0.428 MGDGAAVTSSATMMEGPSQDENSMDFDYMSELLLDGCWLEASADGSEFLLQTSPFSNPIFDPSFSWPSLENTEPPRKEDGHVGIEQESQIIVNNAGSSDRQRCEFEAHLGEGVSRLWIPPTPNPGPGGSFITEKLIRALKWIKDFNRNKDMLIQIWVPVNRGDDRPILRANDLPFSLESRSLNLAKYREISVRYQFSVEEEDSKELVAGLPGRVYRDKIPEWTPDVRFFRSEEYPRVDHAQECDIHGTLAVPVFEQGSRTCLGVIEVVMTTQQSNYGRELETVCKALEVVDLRSSGHSSLQNVKACDKSYETALPEIQEVLRSACEMHKLPLAQTWVSCIQQGKDGCRHSDDNYANCISPVEHACYVGDSSVKFFHEACMEHHLLKGQGVAGGAFMTNQPCFSADITSLSKTDYPLSHHARLFGLRAAVAIRLRSIYSTSDDYVLEFFLPVDCNDSEEQKNMLTSLSMIIQRVCRSLRVITDKELDKDNLSSNEVMAVTDGRFATNAIWSESQHSRMAASLGGEENFSETLGKRFSEQRKQHETLTLKGDLDCGRARSPSVEGTFLSSLGVNRTGEKRRAKAEKTITLQVLRQYFAGSLKDAAKNIGVCTTTLKRICRQHGIKRWPSRKIKKVGHSLQKLQLVIDSVQGASGSFQIDSFYSKFSDLSSPRTSLISTLNQIDNQASLSTLPDPDSLSPEGASKSPSSSCSQSSFSSHSCSIMSEQQHHKGNAAAAAGNKDPSVDEDSVNVVLKRIRSEAELKSLIQDNKTKLIPRSQSQETLGENLKTEHQKSLLKTARKASQKEDSHRVKVTFGDEKTRFRLPKNWGYEDLVQEIARRFNVSEMSKFDIKYLDDDYEWVLLTCDADLEECIDVSQSSETSTIKLCLQPSSNFIRSSLEFR 900
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05777 900 Pfam PB1 domain 807 888 IPR000270 GO:0005515
Trre5g05777 900 ProSiteProfiles PB1 domain profile. 806 889 IPR000270 GO:0005515
Trre5g05777 900 MobiDBLite consensus disorder prediction 685 726 - -
Trre5g05777 900 Pfam RWP-RK domain 585 633 IPR003035 -
Trre5g05777 900 SUPERFAMILY CAD & PB1 domains 800 891 - -
Trre5g05777 900 Gene3D - 802 888 - -
Trre5g05777 900 MobiDBLite consensus disorder prediction 1 22 - -
Trre5g05777 900 PANTHER PROTEIN NLP8 105 889 IPR045012 GO:0003700
Trre5g05777 900 MobiDBLite consensus disorder prediction 685 744 - -
Trre5g05777 900 ProSiteProfiles RWP-RK domain profile. 572 653 IPR003035 -
Trre5g05777 900 CDD PB1_NLP 807 888 IPR034891 -
Trre5g05777 900 SMART PB1_new 806 889 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05777 Trre-Chr5 57638998 57642614 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05777 19 891 NLP Transcription Factor Family AT1G20640 49.266 0.0 737
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Trre5g05777 PB1 4.1e-18 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05777 - - gmx:100790922 1223.76