Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05742 ATGGGTGGAGTAAATAGCACCGGACTTAACTTACCTGTGATAGACTATGGCCAAGGCCCTGGGAATGGAGGTGGCGGTGGAGGAGGTGGACTTGTTATCGGCGGAGGAGGAGGTGGGGGAGCAACTACTTCCCAAAAACTGACTACCAATGATGCTTTATCGTATTTGAAGGAAGTGAAAGACATGTTCCAAGACCAAAAAGAAAAATATGACATGTTCCTCGAGGTCATGAAAGATTTCAAGGCTCAAAAGACTGACACTCAAGGTGTCATAGAAAGGGTAAAGGACCTCTTCAAAGGTCACAACAATTTGATTTTTGGATTCAACACTTTCCTGCCAAAAGGATATGAGATAACGCTTGATGAAGAGGAGGCTCCTCAGAAGAAAACGGTTGAATTTGAAGAAGCTATTAGTTTTGTGAACAAGATAAAGAAACGCTTCCAAAATGATGAGCATGTTTACAAATCATTCTTGGACATTTTGAATATGTATCGCAAAGAGCACAAGGAGATTGGTGAAGTTTACAGTGAGGTTGCTACCCTTTTTAAAGAGCATAGAGATTTGCTCGAGGAGTTCACTAGATTCTTACCAGATAATTCTGCAGCACCTTCCACACAGCATGCTCCATTTGGTCGAAATTCTTTGCAGCGCTTCAATGAGCGAAGTTCTATGACACCCATGATGCGGCAAATGCAAGCAGAAAAGCAACGTTATCGGCGAGATCGATTTCCTTCCCATGATCGTGATATGAGTGTTGAACGTCCTGATCTGGATGACGACAAGACAATGATGAACATGCACAAGGAGCAAAGGAAACGTGAGAGCAGGGATAGAAGGATTCGCGATCATGATGATAGAGAACATGATCTTGATAACTCACAACGCTTTCCTGACAAAAAGAAATCTGTTAAGAAGGCTGAAGCTTATGGGCTGTCTTCTGACTTTGCTTCTCACGATGATAAAGATGCATTAAAGATCATGTATAGTCAAGCATTCAGTTTCTGTGAGAAAGTTAAGGAGAAGTTGAGCAGCGCTGAGGACTACCAAGCATTCTTGAAGTGCCTTCATATTTTTAGCAACGGAATAATTAGAAGGAATGATTTACAAAATTTGGTGACTGATTTACTTGGAAAGCATTCTGATCTCATGAGCGAATTCAATGATTTCTTAGAGCGTTGTGAAAATATTGATGGGTTCCTTGCTGGTGTCATGAGTAAAAAGCCACTAGCTACTGAAGGTCATTCATCAAGATCAACCAAGTTGGAGGAAAAAGAACACAAGCGTGAGATGGACGGAGCTAAAGAGAAGGAGAGATACAAGGAGAAATACATGGGAAAATCCATCCAAGAACTTGACCTTAGTGACTGCAAACATATGCGCCGAAATCAATACGAAGAAAGCTTGTTCAGATGTGAAGATGACAGGTTTGAGTTGGACATGTTATTAGAGTCTGTGAGTTCTGCTGCTAAACGAGCTGAAGAGTTGTATAACAACATTATTGAAAATAAGATCAGTGTGGAGAGTCTGAGTCGCATTGAAGATCACTTCACTGTTCTAAATCTAAGATGCATTGAACGCCTATATGGTGACCATGGTCTTGACGTCCTAGACATACTGCGTAAGAACCCAACTCATGCTCTGCCAGTAATATTGACTCGACTGAAGCAGAAACAAGAGGAGTGGACTAGGTGCCGTTCAGATTTCAATAAAGTTTGGGCCGACATTTATTCCAAAAATCACTACAAATCACTTGATCATCACAGCTTCTATTTCAAGCAACAAGATTCAAAGAACTTGAGCACAAAATCTTTGGTGACTGAGATTAAAGAAATTAAAGAGAAGCAGCAAAAAGAGGATGACATCGTTCAGTCTATTGCTGCTGGAGCTAAACATCCCCTCATTCCACATCTGGAATTTGACTTTTCTGATGCTGATATTCACGAGGATCTGTATAAACTGGTTCGTTATTCATGTGAGGAAGTATTCTCATGTAAAGAGTTATTCAATAAAATCATGAGGCTCTGGAGTACCTTCTTGGAACCAATGCTTGGTGTTACTTCCCAATCGCACGGGACAGAAAGGATAGAGGACAGGAAAGTAGGACAAAGCGCTCGGAGTTCCGTTGCACCTAATGTAGGAGGTGATGGAAGCCCTCACAGAGACTCAATTTCAAGGTTACCAAAATCTGACAAGACTGAAGTTGAAGGTAGAGTGACTGAAGTGAAAAATGGTCACCAGACTAGTGTAGCGACCAATGGTAAAGAAAATGGTTCTGTTGGTAGAGATGATCTTTTATTGGATAATAAAGGACAGAAAAGTGTTGAATGCAGTGATAAAGCCCCTGGATTTGGTAAACAGATCTCATCTGATGAACAAGCAGCAAGAAACTCTGCATCTGTCAATGTTAGAGGCGAGAGCAGTGTGAACAGAACCAACTTAGATATGTCTCCAGGACGCGTACTTACTCCATCCCGACCTACTGATGCTGATGTCTCTGTAACCATAGCCAAGTCTCCGAGTTCTAATGTACCTTTGGTGGAGGGATGTGACGTTGCCACTCCAGTACCAGTTACTAATGGCATGTTAATTGAGAACAGTAAAGTTAAAAGCCATGAAGAATCTTCTGTGCCTTGCAAAGTTGAAAAAGAAGAGGGTGAGTTATCCCCAAATGCCGACTCTGAGGAAGATAACTTTGCTGCCTATGAAGATTCAAATGTGCAGTCAAAGCACAATGTTGATAGTGGCAAATATGAGTCTAAAAATGGAGAGGCTGGAGGTGACAATGATGCAGATGCTGATGACGAAGACAGCGAAAATGTTTCTGAAGCTGGTGAAGATGTGTCAGGAAGTGAGTCTGCTGGTGATGAATGCTCCCGGGGAGATCACGAGGAGGAAGATATGGAACATGATGATGTTGATGGTAAGGCTGAGAGTGAAGGTGAAGCTGAGGGGATGTGTGACACACAAACTGGAGGAGATGGCTCACCTTTACCATTATCAGAGAGGTTCCTTTCGACTGTGAAACCTCTCACAAAGCATGTATCAGCAATCTCATTCGTTGAAGATGTGAAGGATTCAAGGGTGTTTTACGGAAATGATGATTTCTTTGCGCTTTTTAGGCTTCATCAAATTCTTTATGAAAGGATCTTATCTGCAAAAGAAAATTCAACGAGCGCCGAAATGAAATGGAAAGCAAAAGATTCTACTTCCACAGATTCATATACAAGGTTTATGGATGCATTATATAATTTGCTCGATGGATCTGCTGAAAATGCTAAGTTTGAAGATGAATGTCGAGCAATTCTTGGGAACCAGTCTTATGTGTTACTCACATTAGACAAGTTAATATATAAATTAATCAGACAGCTTCAAACTGTTGCAACTGATGAGGAAGACAATAAGCTTCTTCAATTATATGAGTACGAAAAATCTCGGAAACCTGGGAAATTAAATGATTCAGTATATCATTCAAATGCACATGTCATCCTTCATGAGGAGAACATATATCGTTTTCAATCTTCCTCAAGCCCTTCTCGACTCTCCATTCAGCTCATGGACAATATGAATGAAAAACCCGAGTTTTCTGCTGTTTCTGTTGATCCAGATTTTTCTTTTTATCTGCACAATGATTTTCTTTCTGTCCTTCCTGCCAAAAAGGAACCGCATGGCATTTTACTGGAAAGAAACAAACCCAAATATGGGGACTTAGACGAGCTTTCTGCAATTTGTGCTGTAATGGAAGATGTCAAAGTAGTTAATGGATTGGAATGCAAGATATCTTGCAACTCATCCAAGATTTCTTATGTTCTTGACACAAGATTTTTTCTTCCGTCCAAGAAGAAAAAGACGAACATCTTCATCATCATCATCAAGTACATCATCTTCTCGGTCTCGCAAGGAAAGAGAGGAAAGATACCGCAAATTGATGACGTCCTCCACCTAAACTGTATATTTATGTTCTCCTCCAAGAAGAAGAGGACTAATGGCTCGGCGAAATTGAAGCAAATCAAGCTTGATGTTAGGCGCGGACAATGGCTTTCTAGAGTCAAAAAGGGATGCAATGTTGAGTCAAACGGAAGGGTTGATAGTTGTCCATCATCTAAGCACATTGCGAGCGAGGAGAATCAAATCAATCAATCATCATACAAGGAAAACAGAAGGAAAAGAGGAGAGAACGGTATGTGTGTCCAAGGCAACGATCCCAGATCCATGATAGACAGCTCTATTCAAAGTACTTATAATCCCGATGAGTTAAGGAATGGTTTTACCGGGAGCAGCAGTAGTAGCAGCACTTGTACTTTTTCCTCAGGAAATCTCAGCGAGGAAGATGGATGCCTTGATGATTGGGAGGCTATTGCCGATGCTTTATATGCAGATGATAACGAGCATTCCATGGTTTCAGAGTCTCCTATAGAGCACGAGATAAAGTCTTACATTGATTCAGAAGCTACTAAGAATCCTAGAGTGGATTTCTCGAAGAAAGAGTTAAGGTCAGCGGTTTCCGAATCACATGTGAGCTGTCAAGCGTGGAAACCCGATGACGCTCTCCATCCTAGGTGTTTGCCTGATCTCTCAAAACCGCATAACTCTCGGTTAAATTCGAACTGGCACAGTAACCACAAAATTGTATCTTGGTCGTGGCAAACAATAATTTCTCAACCTAGTCAATGTCCTATATGTTACGAGGATTTAGATGTGACGGACTCGGAATTTCTTCCTTGTTCGTGTGGATTTCATCTCTGCCTTTTTTGCCACAAAAAGATCGTTGAGGTAGATGGACGATGCCCGGGATGTAGAAAACTATATGACCATGTAGATGGAAATGTTGGATTCAGTATAGGTTCAAATGCTTTTTTTATTACTCAATCATGCAGTATGAGTACAGGGTACTAG 4893 0.411 MGGVNSTGLNLPVIDYGQGPGNGGGGGGGGLVIGGGGGGGATTSQKLTTNDALSYLKEVKDMFQDQKEKYDMFLEVMKDFKAQKTDTQGVIERVKDLFKGHNNLIFGFNTFLPKGYEITLDEEEAPQKKTVEFEEAISFVNKIKKRFQNDEHVYKSFLDILNMYRKEHKEIGEVYSEVATLFKEHRDLLEEFTRFLPDNSAAPSTQHAPFGRNSLQRFNERSSMTPMMRQMQAEKQRYRRDRFPSHDRDMSVERPDLDDDKTMMNMHKEQRKRESRDRRIRDHDDREHDLDNSQRFPDKKKSVKKAEAYGLSSDFASHDDKDALKIMYSQAFSFCEKVKEKLSSAEDYQAFLKCLHIFSNGIIRRNDLQNLVTDLLGKHSDLMSEFNDFLERCENIDGFLAGVMSKKPLATEGHSSRSTKLEEKEHKREMDGAKEKERYKEKYMGKSIQELDLSDCKHMRRNQYEESLFRCEDDRFELDMLLESVSSAAKRAEELYNNIIENKISVESLSRIEDHFTVLNLRCIERLYGDHGLDVLDILRKNPTHALPVILTRLKQKQEEWTRCRSDFNKVWADIYSKNHYKSLDHHSFYFKQQDSKNLSTKSLVTEIKEIKEKQQKEDDIVQSIAAGAKHPLIPHLEFDFSDADIHEDLYKLVRYSCEEVFSCKELFNKIMRLWSTFLEPMLGVTSQSHGTERIEDRKVGQSARSSVAPNVGGDGSPHRDSISRLPKSDKTEVEGRVTEVKNGHQTSVATNGKENGSVGRDDLLLDNKGQKSVECSDKAPGFGKQISSDEQAARNSASVNVRGESSVNRTNLDMSPGRVLTPSRPTDADVSVTIAKSPSSNVPLVEGCDVATPVPVTNGMLIENSKVKSHEESSVPCKVEKEEGELSPNADSEEDNFAAYEDSNVQSKHNVDSGKYESKNGEAGGDNDADADDEDSENVSEAGEDVSGSESAGDECSRGDHEEEDMEHDDVDGKAESEGEAEGMCDTQTGGDGSPLPLSERFLSTVKPLTKHVSAISFVEDVKDSRVFYGNDDFFALFRLHQILYERILSAKENSTSAEMKWKAKDSTSTDSYTRFMDALYNLLDGSAENAKFEDECRAILGNQSYVLLTLDKLIYKLIRQLQTVATDEEDNKLLQLYEYEKSRKPGKLNDSVYHSNAHVILHEENIYRFQSSSSPSRLSIQLMDNMNEKPEFSAVSVDPDFSFYLHNDFLSVLPAKKEPHGILLERNKPKYGDLDELSAICAVMEDVKVVNGLECKISCNSSKISYVLDTRFFLPSKKKKTNIFIIIIKYIIFSVSQGKRGKIPQIDDVLHLNCIFMFSSKKKRTNGSAKLKQIKLDVRRGQWLSRVKKGCNVESNGRVDSCPSSKHIASEENQINQSSYKENRRKRGENGMCVQGNDPRSMIDSSIQSTYNPDELRNGFTGSSSSSSTCTFSSGNLSEEDGCLDDWEAIADALYADDNEHSMVSESPIEHEIKSYIDSEATKNPRVDFSKKELRSAVSESHVSCQAWKPDDALHPRCLPDLSKPHNSRLNSNWHSNHKIVSWSWQTIISQPSQCPICYEDLDVTDSEFLPCSCGFHLCLFCHKKIVEVDGRCPGCRKLYDHVDGNVGFSIGSNAFFITQSCSMSTGY 1630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05742 1630 MobiDBLite consensus disorder prediction 741 755 - -
Trre5g05742 1630 SUPERFAMILY PAH2 domain 43 114 IPR036600 GO:0006355
Trre5g05742 1630 Pfam Sin3 family co-repressor 455 502 IPR013194 -
Trre5g05742 1630 Pfam RING/Ubox like zinc-binding domain 1557 1603 - -
Trre5g05742 1630 ProSiteProfiles PAH domain profile. 129 199 IPR003822 GO:0006355
Trre5g05742 1630 Coils Coil 482 502 - -
Trre5g05742 1630 MobiDBLite consensus disorder prediction 416 435 - -
Trre5g05742 1630 MobiDBLite consensus disorder prediction 410 435 - -
Trre5g05742 1630 ProSiteProfiles Zinc finger RING-type profile. 1557 1599 IPR001841 -
Trre5g05742 1630 ProSiteProfiles PAH domain profile. 45 115 IPR003822 GO:0006355
Trre5g05742 1630 Pfam C-terminal domain of Sin3a protein 1029 1272 IPR031693 -
Trre5g05742 1630 MobiDBLite consensus disorder prediction 1364 1379 - -
Trre5g05742 1630 MobiDBLite consensus disorder prediction 199 303 - -
Trre5g05742 1630 FunFam Paired amphipathic helix protein SIN3 321 395 - -
Trre5g05742 1630 SUPERFAMILY PAH2 domain 126 198 IPR036600 GO:0006355
Trre5g05742 1630 Gene3D Paired amphipathic helix 321 395 IPR036600 GO:0006355
Trre5g05742 1630 MobiDBLite consensus disorder prediction 1364 1409 - -
Trre5g05742 1630 SMART hdac_interact2seq4b 442 509 IPR013194 -
Trre5g05742 1630 MobiDBLite consensus disorder prediction 863 995 - -
Trre5g05742 1630 Gene3D Paired amphipathic helix 51 113 IPR036600 GO:0006355
Trre5g05742 1630 MobiDBLite consensus disorder prediction 199 230 - -
Trre5g05742 1630 MobiDBLite consensus disorder prediction 721 740 - -
Trre5g05742 1630 MobiDBLite consensus disorder prediction 233 303 - -
Trre5g05742 1630 SUPERFAMILY RING/U-box 1548 1606 - -
Trre5g05742 1630 ProSiteProfiles PAH domain profile. 324 393 IPR003822 GO:0006355
Trre5g05742 1630 MobiDBLite consensus disorder prediction 866 887 - -
Trre5g05742 1630 MobiDBLite consensus disorder prediction 913 927 - -
Trre5g05742 1630 FunFam Paired amphipathic helix protein Sin3 51 113 - -
Trre5g05742 1630 PANTHER SIN3B-RELATED 45 1171 IPR039774 GO:0003714
Trre5g05742 1630 SUPERFAMILY PAH2 domain 326 393 IPR036600 GO:0006355
Trre5g05742 1630 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1539 1609 IPR013083 -
Trre5g05742 1630 CDD mRING-HC-C4C4_CNOT4 1556 1600 IPR039515 -
Trre5g05742 1630 MobiDBLite consensus disorder prediction 928 942 - -
Trre5g05742 1630 Pfam Paired amphipathic helix repeat 346 390 IPR003822 GO:0006355
Trre5g05742 1630 Pfam Paired amphipathic helix repeat 152 196 IPR003822 GO:0006355
Trre5g05742 1630 Pfam Paired amphipathic helix repeat 68 112 IPR003822 GO:0006355
Trre5g05742 1630 MobiDBLite consensus disorder prediction 686 827 - -
Trre5g05742 1630 Gene3D Paired amphipathic helix 127 200 IPR036600 GO:0006355
Trre5g05742 1630 FunFam Paired amphipathic helix SIN3-like protein 128 199 - -
Trre5g05742 1630 MobiDBLite consensus disorder prediction 789 818 - -
Trre5g05742 1630 MobiDBLite consensus disorder prediction 760 774 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05742 Trre-Chr5 57361678 57374929 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05742 31 148 WRKY Transcription Factor Family AT4G12020 49.580 1.61e-22 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre5g05742 Sin3a_C 2.4e-51 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05742 K11644 - gmx:100807181 1958.34