Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05741 ATGGGTGTGGCACATGGGAGATTAAATCCCAATAACATCTTGATATTCAAGGATAGGGATAACGGACTGCGGGCCAAGTTATCCCATTTTTGCTGTTCTTCGTCCGGAACTCCAGGATGGCTTTCACCCGAACAAGTGAAAGGACAGCAAGGAGACATGTCTTCTGACAAGTACGTACTTGGATTGCTTTTGTCCTATTGTATGATTGGAGAGCATTTGATGGGAAACTTTATGTCCTTTGATCGCTATGGAGAGATGAATGCTAATGATGCGTCTCTATGCAAGGAAATTATTAAAGCCAAAGCGCTTCGGCTGCCTCATTTAGAAACCAAACTTATTCCAGAGGCTATCTCTCTAGTCCAAGGGTTAATGACAAATAAACCGGAAGACAGATTGAGTCTAAAAACACTAGGATTGGAGCATCCAATTTTTTGGAGTAACTTCAAGAGAGCACGTCTTATTTGTGAGAAGCATAATTGGTTGAAACATTCAAAAAATTCTCATGCTGTTACATATTTGGATACAACCAAAAAGGGAGATATCTTAAAAGGTGTGGATTGGCGGAAACACATCAATAAGAAACTTTGCGATAAGTATAAAGAAAATAAAATAAAGCAGAAAAATCAAGAAGCTCTCAGTTCATCGGTTGTCGGCGGTTCACCGGCTGTTAGCGGTTCATCAGTCGGTTCATCGGTTGTCAGTGGATCGGTCACATCGTTGATATGGTTCATTCGCAACGTTACCCAACATTTCAAAGACTATGAAGATGAATTTAAAGGGGTAGGAGTAAAAAACGGTGGCGAAGCCTGGAGCTACTTTTTGGTGCGATTTCCCAATCTCGTGGTTGAATGCTTCAATTACGTGAAAAACCATCTGTTGGATAATGAACAGTTTGAGGATTTTTTGCTGCCACTACAAGGATAA 924 0.4069 MGVAHGRLNPNNILIFKDRDNGLRAKLSHFCCSSSGTPGWLSPEQVKGQQGDMSSDKYVLGLLLSYCMIGEHLMGNFMSFDRYGEMNANDASLCKEIIKAKALRLPHLETKLIPEAISLVQGLMTNKPEDRLSLKTLGLEHPIFWSNFKRARLICEKHNWLKHSKNSHAVTYLDTTKKGDILKGVDWRKHINKKLCDKYKENKIKQKNQEALSSSVVGGSPAVSGSSVGSSVVSGSVTSLIWFIRNVTQHFKDYEDEFKGVGVKNGGEAWSYFLVRFPNLVVECFNYVKNHLLDNEQFEDFLLPLQG 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05741 307 Gene3D KEN domain 150 303 IPR038357 -
Trre5g05741 307 ProSiteProfiles KEN domain profile. 147 304 IPR010513 GO:0004540|GO:0006397
Trre5g05741 307 Pfam Protein kinase domain 2 143 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g05741 307 SUPERFAMILY Protein kinase-like (PK-like) 1 150 IPR011009 -
Trre5g05741 307 ProSiteProfiles Protein kinase domain profile. 1 144 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre5g05741 307 Pfam Ribonuclease 2-5A 163 301 IPR010513 GO:0004540|GO:0006397
Trre5g05741 307 Gene3D Transferase(Phosphotransferase) domain 1 1 149 - -
Trre5g05741 307 PANTHER IRE1-RELATED 2 299 IPR045133 GO:0004521|GO:0004674|GO:0030968
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05741 Trre-Chr5 57354728 57355727 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05741 2 162 AGC Kinase Gene Family AT3G08720 27.976 7.06e-07 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK IRE1 Trre5g05741 Ribonuc_2-5A 3.4e-13 No_clan