Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre5g05736 | ATGTCATCGGCAGCGAAAATCAATGTCTCCGGCAGTGATGAAGGAAAACACTATCCTCCTCCACTAGCCTCTCACAACGATATCCTCGATGACTCTACTCTCTTCTGGAACACTCTTCGTCGCTTTCACTTTCTTATGGCTACCAAATTCATGATTCCTGTGATTGGAGGTAAGGAGCTAGATTTGCACGTTCTTTACGTGGAAGTTACAAGGAGAAGCGGTTACGAGAAGGTAGTTGTGGAGAAGAAATGGAGAGAAGTAGGTAGTGTATTTAGATTCTCATCAACAACTACAAGTGCTTCATTTGTACTAAGAAAACATTACTTGAATCTTCTTTACCATTACGAACAAGTTCACTTCTTCAAAGTTCAGGGTCCTATATTCACTCCATCAGCAGATGCATTTTCTGGAAATAGTCCCTCGTGGCGACCTGAATTGGCTATTGTTCAATATTCACCTAAGATGGTAAATGATAGTGCTGAATCTCATGACGAAGAGAATGTAGATAGTTCATGTCTTTTGGGAAAAGGAACAATAGAAGGAAAATTTGACTGCGGTTATATAGTGTCCGTAAAATTGGGTTCAGAGGTTCTCAAAGGGGTACTTTACCATCCAGAACAAGTGGTTGATGCTCCATCATTGGTTCCACAACATGCTATTGTACCATTCAATCTTCAATCTCATAGTTCTGGTAGGAGAAAGAGAAGAAAAAGAAAGTGGGACCCAAACTATCCAAAACCAAATAGGAGTGGCTATAACTTTTTCTTTGCTGAAAAACATTACAAGCTCAAAGAACTCTATCCAAACAGAGAAAGGGAATTTACTAAAATGATTGGTCAATCCTGGAATAGTCTTAGCCCTGAAGAAAGAATGATTTATCAAAACATTGGCTTAAGGGACAAAGAAAGGTACAAAAGAGAATTGACAGAGTATAAAGAGAAAATGAAGGTTGGGCAGAATGTAGAACTTGGGCTTCCATAA | 981 | 0.3914 | MSSAAKINVSGSDEGKHYPPPLASHNDILDDSTLFWNTLRRFHFLMATKFMIPVIGGKELDLHVLYVEVTRRSGYEKVVVEKKWREVGSVFRFSSTTTSASFVLRKHYLNLLYHYEQVHFFKVQGPIFTPSADAFSGNSPSWRPELAIVQYSPKMVNDSAESHDEENVDSSCLLGKGTIEGKFDCGYIVSVKLGSEVLKGVLYHPEQVVDAPSLVPQHAIVPFNLQSHSSGRRKRRKRKWDPNYPKPNRSGYNFFFAEKHYKLKELYPNREREFTKMIGQSWNSLSPEERMIYQNIGLRDKERYKRELTEYKEKMKVGQNVELGLP | 326 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre5g05736 | 326 | CDD | HMG-box_AtHMGB9-like | 245 | 311 | - | - | |
Trre5g05736 | 326 | PANTHER | HIGH MOBILITY GROUP B PROTEIN 9 | 9 | 320 | - | - | |
Trre5g05736 | 326 | CDD | ARID_HMGB9-like | 31 | 116 | IPR045303 | GO:0003677 | |
Trre5g05736 | 326 | ProSiteProfiles | HMG boxes A and B DNA-binding domains profile. | 245 | 312 | IPR009071 | - | |
Trre5g05736 | 326 | Pfam | HMG (high mobility group) box | 245 | 312 | IPR009071 | - | |
Trre5g05736 | 326 | SMART | ARID_2 | 26 | 116 | - | - | |
Trre5g05736 | 326 | Pfam | ARID/BRIGHT DNA binding domain | 34 | 116 | IPR001606 | GO:0003677 | |
Trre5g05736 | 326 | Gene3D | High mobility group box domain | 228 | 323 | IPR036910 | - | |
Trre5g05736 | 326 | SUPERFAMILY | HMG-box | 242 | 315 | IPR036910 | - | |
Trre5g05736 | 326 | Gene3D | - | 23 | 126 | IPR036431 | GO:0003677 | |
Trre5g05736 | 326 | ProSiteProfiles | ARID domain profile. | 29 | 120 | IPR001606 | GO:0003677 | |
Trre5g05736 | 326 | SMART | bright_3 | 30 | 121 | IPR001606 | GO:0003677 | |
Trre5g05736 | 326 | Coils | Coil | 301 | 321 | - | - | |
Trre5g05736 | 326 | SMART | hmgende2 | 244 | 313 | IPR009071 | - | |
Trre5g05736 | 326 | SUPERFAMILY | ARID-like | 31 | 128 | IPR036431 | GO:0003677 | |
Trre5g05736 | 326 | MobiDBLite | consensus disorder prediction | 225 | 245 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre5g05736 | Trre-Chr5 | 57301891 | 57303794 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre5g05736 | 16 | 317 | ARID Transcription Factor Family | AT1G76110 | 63.754 | 9.35e-134 | 382 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | ARID | Trre5g05736 | ARID | 1.6e-16 | CL0123 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre5g05736 | - | - | gmx:100784746 | 517.694 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Trre5g05736 | 5 | 57301891 | 57303794 | Trre5g05736 | 5 | 57301891 | 57303794 | ECH |