Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05729 ATGACTCCTCAGAAACCAGACTCCGTCGTTTACCTTCACGGTAACCTCGATTTGAAAATCGTTGAGGCTCGTTATTTACCAAACATGGACATGTTTTCAGAGCGTTTGCGAAGATTTTTTTCCTCTATTAACAAATGCAGCAATTCAATTAGTGGTAAAAACAGAAACCATCCGCCACGTCATCATCATCATAAGATAATCACCAGTGATCCATACGTAACCGTTTGTCTCGCCGGTGCTACGGTGGCGCGTACGCGCGTTATTTCGAATTCCCAATCACCGCGATGGGAAGAGCATTTTAAGATTCCTCTTGCTCATCCTGTTTCTCAGGTTGAATTCTACGTGAAAGATAATGACATGTTTGGCGCTGATTTGATCGGAGTCGCAGTCGTTTCTGCTAAGAGGATCTTATCAGGTGAAGATATCAGTGATTGGTTTCCGATTATAGGTTCTGGTGGTAAACCTCCAAAACCTGATTGCGCGGTTTTTCTGGAGATGAAATTCACCAGGTGTGATGATAATCCTCTTTACCGTTCCGGCATTGCGCCTGATCCGGAGAGGTTTTCGGTTCAGGATTCGTATTTTCCAGTTCGGAAAGGAGGATCGGTGACGCTGTATCAAGATGCACATGTTCCGAATTCGATGTTGCCGGGGATTGAATTGGATGATGGTGTTGAATTTCAGCAGGGGAAGTGTTGGGAAGATATCTGTCACGCAATATTGGAAGCACATCATATGGTTTATATTGTTGGTTGGTCAATTTTCCATAAGGTGAAGCTTGTTAGAGAACCAACAAAACCCTTACCAAGTGGTGGAAATTTGAATTTGGGGGAATTACTCAAGTATAAATCACAAGAAGGTTTACGTGTTTTACTGTTGGTTTGGGATGATAAAACTTCACACAGCAAATTCTTCATCAACACGAATGGAATAATGCAGACTCATGATGAAGAAACTCGAAAGTTTTTCAAGTATTCTTCAGTTACATGTGTGTTATCACCACGATATGCCAGCAGTAAGCTTAGCATTTTCAAGCAGCAGGTTGTCGGAACGCTCTTTACGCACCATCAGAAATGTGTGATCGTTGATACCCAAGCACATGGCAATAACCGGAAGATAACCGCATTTATAGGTGGTCTAGATCTTTGTGATGGCCGTTATGATACACCTGAGCATAGACTTTTCCATGATCTTGACACTGTTTATAAGGATGATTATCATAATCCCACATTTTCGGAAGGAACCAAGGGTCCAAGGCAACCATGGCATGACCTACATTGCAAAATTGAAGGGCCCGCTGCATATGATATACTCACTAATTTTGAGCAGCGCTGGAAGAAAGCCACCAAATGGTCTGAGTTGGGTCAAAAATTCAAAAGAGTATCTCACTGGCATGACGATTCTTTGATTAAGTTAGAACGCATCTCTTGGATTCTTAGTCCTTCTGAAGCAATGCCAAATGATGATCCTGAATTATGGGTTTCAAAGGACGGCGACCCTGAAAATTGGCATGTTCAGATTTTTCGATCCATAGATTCAGGCTCTTTGAAAGGATTTCCTAAGAATACATATGAAGCTAGGGCTCAGAATCTTGTTTGTGCTAAAAATTTGGTCATAGACAAGAGTATTCAAACAGCTTATATACATGCCATCAGATCTGCTCAGCATTTTATCTATATCGAGAATCAATACTTCATTGGATCATCCTTTGCTTGGCCATCTTACAAAGAAGCAGGTGCTGATAACTTAATTCCAATGGAGTTGGCGCTGAAAATTGTCAGTAAGATCAGATCCCGGGAGAGATTTACTGTTTATATTGTCATTCCAATGTGGCCTGAAGGCGCCCCTTCCTCTGCCGCCGTGCAAGAAATACTCTATTTTCAGGGACAAACTATGCGAATGATGTATGAAATCATAGCTCGGGAATTAAAATCTATGAAACTTGACAATAGTCATCCACAAGATTACCTCAATTTTTACTGTCTTGGTAACCGAGAGAAGTTTCCAACTGAAGTTTCAAATCCAAATAATTCACCTTCTGATCATGGCGACATGGTTTCTGCTTCACAAAATTTCCAACGATTTATGATTTATGTACATGCCAAAGGAATGGTTGTGGATGATGAATATGTGATAGTTGGGTCTGCCAATATCAATCAACGATCTTTGGCGGGATCAAGAGATACCGAGATAGCAATGGGTGCATATCAATCCCGTCATACATGGAGCGAGAAAAAGGGGCATCCTCGTGGTCAGGTATATGGGTATAGAATGTCCTTGTGGGCAGAGCACTTAGGGACCATACATGACTGCTTCAACGAGCCTGAAAGTTTGGAATGTGTGGAGAGTGTGAACAAGATTGCTAAAGAAAACTGGGAAAAGTTTACAGCTGATGATTTTAAGCCATTGCAAGGGCACATTATGAAGTATCCCATCAAAGTGAATGCAAATGGGAAAGTAAGCTCTTTACCTGGATTTGAGTCTTTCCCAGATGTCGGTGGCAAGGTGCTGGGTTCCCGTTCTACCTTTCCTGATGCTCTAACTACATAG 2550 0.4173 MTPQKPDSVVYLHGNLDLKIVEARYLPNMDMFSERLRRFFSSINKCSNSISGKNRNHPPRHHHHKIITSDPYVTVCLAGATVARTRVISNSQSPRWEEHFKIPLAHPVSQVEFYVKDNDMFGADLIGVAVVSAKRILSGEDISDWFPIIGSGGKPPKPDCAVFLEMKFTRCDDNPLYRSGIAPDPERFSVQDSYFPVRKGGSVTLYQDAHVPNSMLPGIELDDGVEFQQGKCWEDICHAILEAHHMVYIVGWSIFHKVKLVREPTKPLPSGGNLNLGELLKYKSQEGLRVLLLVWDDKTSHSKFFINTNGIMQTHDEETRKFFKYSSVTCVLSPRYASSKLSIFKQQVVGTLFTHHQKCVIVDTQAHGNNRKITAFIGGLDLCDGRYDTPEHRLFHDLDTVYKDDYHNPTFSEGTKGPRQPWHDLHCKIEGPAAYDILTNFEQRWKKATKWSELGQKFKRVSHWHDDSLIKLERISWILSPSEAMPNDDPELWVSKDGDPENWHVQIFRSIDSGSLKGFPKNTYEARAQNLVCAKNLVIDKSIQTAYIHAIRSAQHFIYIENQYFIGSSFAWPSYKEAGADNLIPMELALKIVSKIRSRERFTVYIVIPMWPEGAPSSAAVQEILYFQGQTMRMMYEIIARELKSMKLDNSHPQDYLNFYCLGNREKFPTEVSNPNNSPSDHGDMVSASQNFQRFMIYVHAKGMVVDDEYVIVGSANINQRSLAGSRDTEIAMGAYQSRHTWSEKKGHPRGQVYGYRMSLWAEHLGTIHDCFNEPESLECVESVNKIAKENWEKFTADDFKPLQGHIMKYPIKVNANGKVSSLPGFESFPDVGGKVLGSRSTFPDALTT 849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05729 849 SMART C2_3c 15 145 IPR000008 -
Trre5g05729 849 FunFam Phospholipase D delta 223 467 - -
Trre5g05729 849 SUPERFAMILY Phospholipase D/nuclease 525 781 - -
Trre5g05729 849 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 695 722 IPR001736 GO:0003824
Trre5g05729 849 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 351 386 IPR001736 GO:0003824
Trre5g05729 849 Gene3D Endonuclease Chain A 514 741 - -
Trre5g05729 849 SMART pld_4 695 722 IPR001736 GO:0003824
Trre5g05729 849 SMART pld_4 351 386 IPR001736 GO:0003824
Trre5g05729 849 Pfam Phospholipase D Active site motif 696 722 IPR001736 GO:0003824
Trre5g05729 849 Pfam Phospholipase D Active site motif 352 386 IPR001736 GO:0003824
Trre5g05729 849 ProSiteProfiles C2 domain profile. 1 146 IPR000008 -
Trre5g05729 849 SUPERFAMILY Phospholipase D/nuclease 192 457 - -
Trre5g05729 849 CDD C2_plant_PLD 8 169 - -
Trre5g05729 849 Pfam C2 domain 14 148 IPR000008 -
Trre5g05729 849 Gene3D C2 domain 9 167 IPR035892 -
Trre5g05729 849 PANTHER PHOSPHOLIPASE D 7 840 IPR015679 -
Trre5g05729 849 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 12 152 IPR035892 -
Trre5g05729 849 Gene3D Endonuclease Chain A 225 469 - -
Trre5g05729 849 PIRSF PLD_plant 1 849 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Trre5g05729 849 Pfam Phospholipase D C terminal 770 839 IPR024632 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05729 Trre-Chr5 57248789 57255049 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05729 1 678 Phospholipase D Gene Family (Wang group) AT4G35790 66.523 0.0 971
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05729 K01115 - gmx:100795859 1500.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05729 5 57248789 57255049 Trre5g05729 5 57248789 57255049 ECH