Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05720 ATGTCAAGTAGTGGGGATACTCATTGGTGTTATAATTGCATGAGGTCAGTTCGACTGGGACGGCAACATGCGGTTTGCTCTGGTTGTGATGGGGGATTTGTTCAAGATCTCGATGATATGGTCCATGCTAGCTATGGAGCGGACAACATTGAGGAACTAATTCCCGAACACAGTCCAAGGTTTACTACTCCTTTGTTAATCTATGGTGGCCAAATTCCACACAGGTTTTCTAGACAAGGTGGCATTGATGCTCTCTTTAGAGGGACTCCAGGAACTGGTGTGGCGATAGGTAACTCGGTTAACTATTTTACTGGTCCTGGAGTAGAAGAACTGTTTGAACAGATTTCGGCTAATGACCGGCCAGGCCCTCCACCTGCATCTCGGTCCTCTATAGATGCAATTCCTATTGTGAAGATCGCGTCGAAGCATCTTCGATCTGATCCACATTGTCCAGTATGCCAAGATAAATTTGAGCTTGGGTCTAATGCAAGACGAATGCCATGTAAGCATATGTTTCACTCAGATTGTATTATACCGTGGTTGGTTCAGCATAACACCTGCCCTGTTTGCCGTCAAGAATTGCCACAAAATAGTGGAAGAAGGAGCAACCCTTTTTCCTTTTTGTGGCCTTTCGGATCTTGA 642 0.4533 MSSSGDTHWCYNCMRSVRLGRQHAVCSGCDGGFVQDLDDMVHASYGADNIEELIPEHSPRFTTPLLIYGGQIPHRFSRQGGIDALFRGTPGTGVAIGNSVNYFTGPGVEELFEQISANDRPGPPPASRSSIDAIPIVKIASKHLRSDPHCPVCQDKFELGSNARRMPCKHMFHSDCIIPWLVQHNTCPVCRQELPQNSGRRSNPFSFLWPFGS 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05720 213 SMART ring_2 150 190 IPR001841 -
Trre5g05720 213 Pfam Ring finger domain 149 191 IPR001841 -
Trre5g05720 213 Pfam zinc-ribbon 7 36 IPR039525 GO:0061630
Trre5g05720 213 ProSiteProfiles Zinc finger RING-type profile. 150 191 IPR001841 -
Trre5g05720 213 FunFam E3 ubiquitin-protein ligase RING1-like 113 197 - -
Trre5g05720 213 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 101 195 - -
Trre5g05720 213 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 197 IPR013083 -
Trre5g05720 213 SUPERFAMILY RING/U-box 130 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05720 Trre-Chr5 57188749 57189390 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05720 97 197 C3H Transcription Factor Family AT5G01980 40.777 1.71e-22 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05720 K11982 - jre:109008136 289.271