Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre5g05714 ATGATGCTTGATTCAGTTCTTTATGCGCTTTTTCTTCCTTGTCTTGGAATGAGTGCAATTTTCATCGTCTACATGTGTCTTCTATGGTATTCCACTACTCTTAACAACCGTTCTGATGGTACACCACCGATTAAACCGGTAACTGTTAAGGGTCTTTCTCCTTTAGATCTTGAAAAGTTACCTAAAATCACCGGTAAAGAATTGGTTGCGGTCACCGAATGTGCCGTTTGCCTCGACGAAATCGATAATGAACAACCGGCTCGTCTGGTTCCCGGTTGTAATCACGCTTTTCATGTTCAATGTGCTGACACGTGGCTCTCTAAACACGCTCTTTGTCCTCTCTGTAGAACCAAACTCGACCCTCAGATTCTCAATTCTGAAAGCCCCTGCTAA 393 0.4351 MMLDSVLYALFLPCLGMSAIFIVYMCLLWYSTTLNNRSDGTPPIKPVTVKGLSPLDLEKLPKITGKELVAVTECAVCLDEIDNEQPARLVPGCNHAFHVQCADTWLSKHALCPLCRTKLDPQILNSESPC 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre5g05714 130 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 17 124 - -
Trre5g05714 130 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 39 122 IPR013083 -
Trre5g05714 130 ProSiteProfiles Zinc finger RING-type profile. 74 116 IPR001841 -
Trre5g05714 130 SMART ring_2 74 115 IPR001841 -
Trre5g05714 130 Pfam Ring finger domain 73 116 IPR001841 -
Trre5g05714 130 SUPERFAMILY RING/U-box 73 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre5g05714 Trre-Chr5 57164826 57165218 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre5g05714 2 130 C3H Transcription Factor Family AT5G42200 53.676 1.08e-46 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre5g05714 K19037 - gmx:100811160 217.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre5g05714 5 57164826 57165218 Trre5g05714 5 57164826 57165218 ECH
Trre1g00036 1 281575 281961 Trre5g05714 5 57164826 57165218 PCT